Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| AT4G37690.1 | Thale cress | golgi | 91.67 | 25.46 |
| CDX72649 | Canola | golgi | 85.0 | 23.29 |
| Bra017847.1-P | Field mustard | golgi | 85.0 | 23.29 |
| CDY29577 | Canola | golgi | 84.17 | 23.06 |
| AT2G22900.1 | Thale cress | plastid | 76.67 | 20.49 |
| PGSC0003DMT400055223 | Potato | golgi | 71.67 | 19.55 |
| Solyc03g043920.2.1 | Tomato | golgi | 66.67 | 19.32 |
| VIT_00s0322g00030.t01 | Wine grape | mitochondrion | 52.5 | 18.37 |
| GSMUA_Achr3P30030_001 | Banana | golgi | 57.5 | 17.38 |
| KRH28334 | Soybean | plastid | 64.17 | 17.04 |
| KRH77153 | Soybean | golgi, nucleus, peroxisome, plastid | 63.33 | 16.93 |
| GSMUA_Achr3P30020_001 | Banana | cytosol, golgi, plastid | 60.0 | 16.22 |
| GSMUA_Achr1P12580_001 | Banana | golgi, plastid, vacuole | 55.83 | 15.06 |
| Zm00001d052625_P001 | Maize | plastid | 54.17 | 14.74 |
| HORVU0Hr1G025530.1 | Barley | cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, plastid, vacuole | 30.0 | 14.57 |
| HORVU6Hr1G071920.1 | Barley | golgi | 50.0 | 14.05 |
| Zm00001d051681_P001 | Maize | endoplasmic reticulum, golgi, plasma membrane | 50.83 | 13.74 |
| TraesCSU01G194500.1 | Wheat | golgi | 51.67 | 13.54 |
| TraesCS6B01G315100.1 | Wheat | golgi, plasma membrane | 47.5 | 13.44 |
| Os02t0723200-01 | Rice | mitochondrion | 50.0 | 13.42 |
| EES08636 | Sorghum | plastid | 50.0 | 13.36 |
| EES07343 | Sorghum | golgi | 49.17 | 13.32 |
| OQU83610 | Sorghum | cytosol, golgi, peroxisome, plastid | 51.67 | 12.94 |
| Zm00001d052627_P001 | Maize | plastid | 49.17 | 12.88 |
| TraesCSU01G035200.1 | Wheat | endoplasmic reticulum, golgi, peroxisome | 50.83 | 12.87 |
| TraesCS4B01G391200.1 | Wheat | endoplasmic reticulum | 50.83 | 12.73 |
| TraesCS6B01G078800.1 | Wheat | plastid | 50.0 | 12.69 |
| HORVU4Hr1G089670.1 | Barley | endoplasmic reticulum, golgi, peroxisome, plastid | 50.0 | 12.66 |
| OQU83607 | Sorghum | plastid | 48.33 | 12.58 |
| Zm00001d052628_P001 | Maize | plasma membrane | 50.0 | 12.53 |
| TraesCS6D01G266700.1 | Wheat | plastid | 46.67 | 12.17 |
| Os11t0546500-00 | Rice | golgi, peroxisome, plastid | 48.33 | 12.01 |
| AT3G62720.1 | Thale cress | mitochondrion | 45.0 | 11.74 |
| AT5G07720.1 | Thale cress | cytosol, plastid | 44.17 | 11.6 |
| AT1G74380.1 | Thale cress | plastid | 43.33 | 11.38 |
| AT4G02500.1 | Thale cress | mitochondrion | 43.33 | 11.28 |
| AT1G18690.4 | Thale cress | golgi, plastid | 39.17 | 9.16 |
| PGSC0003DMT400023470 | Potato | endoplasmic reticulum | 12.5 | 5.56 |
Protein Annotations
| MapMan:35.1 | EntrezGene:829988 | ProteinID:AEE86912.1 | ArrayExpress:AT4G38310 | EnsemblPlantsGene:AT4G38310 | RefSeq:AT4G38310 |
| TAIR:AT4G38310 | RefSeq:AT4G38310-TAIR-G | EnsemblPlants:AT4G38310.1 | TAIR:AT4G38310.1 | EMBL:BT029255 | ProteinID:CAB37487.1 |
| ProteinID:CAB80496.1 | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
| GO:GO:0005737 | GO:GO:0005768 | GO:GO:0005794 | GO:GO:0005802 | GO:GO:0005975 | GO:GO:0008150 |
| GO:GO:0008152 | GO:GO:0008378 | GO:GO:0009058 | GO:GO:0009987 | GO:GO:0010192 | GO:GO:0010392 |
| GO:GO:0016020 | GO:GO:0016021 | GO:GO:0016740 | GO:GO:0016757 | GO:GO:0051070 | InterPro:Glyco_trans_34 |
| EMBL:KJ138713 | RefSeq:NP_195544.1 | PFAM:PF05637 | PANTHER:PTHR31311 | PANTHER:PTHR31311:SF3 | UniProt:Q9SVF4 |
| UniParc:UPI00000A774C | : | : | : | : | : |
Description
At4g38310 [Source:UniProtKB/TrEMBL;Acc:Q9SVF4]
Coordinates
chr4:+:17948433..17948844
Molecular Weight (calculated)
13903.6 Da
IEP (calculated)
7.703
GRAVY (calculated)
-0.586
Length
120 amino acids
Sequence
(BLAST)
(BLAST)
001: MQLDPPEPGF YDDPDLSYSI EKSITNWDEK RHEWFKSHPS FKPGSENRIL MVTGSQSSPC KNPIGDHLLL LRCFKNKVDY ARIHGHDIFY SNSLLHPKMN
101: SYWAKLPVVK AAMLAHPFMD
101: SYWAKLPVVK AAMLAHPFMD
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.