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Canola
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Canola
Subcellular Localization
min:
: max

 
Winner_takes_all: cytosol

Predictor Summary:
  • cytosol 3
  • golgi 1
  • mitochondrion 1
Predictors GFP MS/MS Papers
Winner Takes All:cytosol
Any Predictor:cytosol, golgi
BaCelLo:cytosol
MultiLoc:golgi
PProwler:mitochondrion
WoLF PSORT:cytosol
YLoc:cytosol
PPI

Inferred distinct locusB in Crop

locusBlocations
CDX68187 golgi
CDX73082 golgi
CDX85826 golgi
CDX90935 golgi
CDX96540 golgi
CDX97271 golgi
CDY18017 golgi
CDY22055 golgi
CDY49114 golgi
CDY50378 golgi
CDY65940 golgi
CDY70090 golgi

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT4G02500.1 CDX68187 AT1G74380.1 22665445
AT4G02500.1 CDX73082 AT1G74380.1 22665445
AT4G02500.1 CDX85826 AT1G74380.1 22665445
AT4G02500.1 CDX96540 AT1G74380.1 22665445
AT4G02500.1 CDY49114 AT1G74380.1 22665445
AT4G02500.1 CDX90935 AT4G02500.1 22665445
AT4G02500.1 CDX97271 AT4G02500.1 22665445
AT4G02500.1 CDY18017 AT4G02500.1 22665445
AT4G02500.1 CDY22055 AT4G02500.1 22665445
AT4G02500.1 CDY50378 AT4G02500.1 22665445
AT4G02500.1 CDY65940 AT4G02500.1 22665445
AT4G02500.1 CDY70090 AT4G02500.1 22665445
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
CDY22055 Canola mitochondrion 90.62 94.65
Bra036262.1-P Field mustard mitochondrion 92.32 93.72
CDY18017 Canola mitochondrion 66.31 92.84
CDX90935 Canola mitochondrion 87.63 91.54
AT4G02500.1 Thale cress mitochondrion 89.55 91.11
CDY70090 Canola mitochondrion 67.59 89.55
CDX97271 Canola mitochondrion 49.47 86.25
Zm00001d026023_P001 Maize endoplasmic reticulum, golgi 48.4 85.66
CDY65940 Canola mitochondrion 47.76 84.21
VIT_07s0005g00150.t01 Wine grape mitochondrion 80.6 83.63
Os03t0300000-01 Rice cytosol 62.05 83.62
KRH37112 Soybean golgi, mitochondrion 76.97 80.22
GSMUA_Achr1P24760_001 Banana mitochondrion 73.56 79.86
VIT_05s0020g01530.t01 Wine grape mitochondrion 77.61 78.11
CDX93965 Canola mitochondrion 76.12 77.95
CDY70418 Canola golgi, mitochondrion 75.91 77.39
GSMUA_Achr8P22410_001 Banana golgi, mitochondrion 70.79 77.39
KRG96428 Soybean mitochondrion 74.84 77.14
Zm00001d025851_P001 Maize cytosol 59.06 76.52
Zm00001d028811_P001 Maize plasma membrane 72.92 76.51
CDY11443 Canola cytosol 9.59 76.27
Zm00001d047694_P001 Maize golgi 72.71 76.12
EER92398 Sorghum golgi 72.28 76.01
Zm00001d051264_P001 Maize mitochondrion, plastid 63.75 75.31
PGSC0003DMT400058812 Potato mitochondrion 74.2 75.0
CDX76657 Canola mitochondrion 30.06 73.44
KRH12052 Soybean mitochondrion 41.58 73.03
HORVU4Hr1G054910.1 Barley golgi, mitochondrion 70.15 72.79
TraesCS4A01G116100.2 Wheat golgi, mitochondrion 69.72 72.35
TraesCS4D01G189500.1 Wheat golgi, mitochondrion 69.51 72.28
TraesCS4B01G188100.1 Wheat golgi, mitochondrion 69.51 72.28
TraesCS1B01G115300.1 Wheat golgi, mitochondrion 69.94 70.24
CDX73082 Canola cytosol 31.98 67.57
CDX96540 Canola cytosol 31.98 67.57
CDX68187 Canola cytosol 31.77 66.82
CDX85826 Canola cytosol 31.77 66.82
CDY11441 Canola mitochondrion 26.87 66.67
CDY49114 Canola peroxisome 19.62 65.71
KRH68171 Soybean golgi, mitochondrion 33.26 64.73
Zm00001d035801_P001 Maize mitochondrion, nucleus, plastid 25.8 62.69
Solyc01g067930.2.1 Tomato mitochondrion 26.44 59.05
CDY11442 Canola cytosol, extracellular, mitochondrion, plastid 10.23 56.47
CDX99024 Canola cytosol, golgi, peroxisome, plastid 53.52 55.29
CDX69995 Canola cytosol 53.52 55.16
CDY19235 Canola cytosol, golgi, plasma membrane, plastid 48.61 50.44
CDY26738 Canola golgi, mitochondrion, plasma membrane, plastid 49.25 47.93
CDX72649 Canola golgi 30.7 32.88
CDY29577 Canola golgi 30.7 32.88
CDY49440 Canola golgi 31.34 32.81
CDX76887 Canola golgi, plastid 31.13 32.59
Protein Annotations
EnsemblPlants:CDY50378EnsemblPlantsGene:GSBRNA2T00096597001Gene3D:3.90.550.10GO:A0A078IMX6GO:GO:0003674GO:GO:0003824
GO:GO:0005575GO:GO:0016020GO:GO:0016021GO:GO:0016740GO:GO:0016757InterPro:Glyco_trans_34
InterPro:IPR029044InterPro:Nucleotide-diphossugar_transPANTHER:PTHR31311PANTHER:PTHR31311:SF6PFAM:PF05637ProteinID:CDY50378
ProteinID:CDY50378.1SEG:segUniParc:UPI0004EEBCCDUniProt:A0A078IMX6MapMan:21.2.1.1.2:
Description
BnaCnng19100DBnaCnng19100D protein [Source:UniProtKB/TrEMBL;Acc:A0A078IMX6]
Coordinates
chrLK032905:-:11656..13794
Molecular Weight (calculated)
54194.9 Da
IEP (calculated)
6.792
GRAVY (calculated)
-0.563
Length
469 amino acids
Sequence
(BLAST)
001: METQILSLKN REDIDEEEED YRTMIERCLG PHRCRRIQRA LRHLKVTVLC LVLTVVVLRG TIGAGKFGTP EQDLDEIHQH FQPSRKRAEP HRVLEEIQTG
101: GDSSSSTSGD GNSAGKEDKP DPNKPYTLGP KISDWDEQRS DWLAKNPTFP NFIGPNKPRV LLVTGSAPKP CENPVGDHYL LKSIKNKIDY CRLHGIEIFY
201: NMALLDAEMA GFWAKLPLIR KLLLSHPEVE FLWWMDSDAM FTDMAFELPW ERYKEYNLVM HGWNEMVYDE KNWIGLNTGS FLFRNNQWAL DLLDTWAPMG
301: PKGKIREEAG KVLTRELKGR PVFEADDQSA MVYLLATQRD TWGNKVYLES GYYLHGYWGI LVDRYEEMIE NYHPGLGDHR WPLVTHFVGC KPCGKFGDYP
401: VERCLKQMDR AFNFGDNQIL QIYGFTHKSL ASRKVKRVRN ETSNPLEMKD ELGLLHPAFK AVKLQTNQV
Best Arabidopsis Sequence Match ( AT4G02500.1 )
(BLAST)
001: MIERCLGAYR CRRIQRALRQ LKVTILCLLL TVVVLRSTIG AGKFGTPEQD LDEIRQHFHA RKRGEPHRVL EEIQTGGDSS SGDGGGNSGG SNNYETFDIN
101: KIFVDEGEEE KPDPNKPYTL GPKISDWDEQ RSDWLAKNPS FPNFIGPNKP RVLLVTGSAP KPCENPVGDH YLLKSIKNKI DYCRLHGIEI FYNMALLDAE
201: MAGFWAKLPL IRKLLLSHPE IEFLWWMDSD AMFTDMAFEL PWERYKDYNL VMHGWNEMVY DQKNWIGLNT GSFLLRNNQW ALDLLDTWAP MGPKGKIREE
301: AGKVLTRELK DRPVFEADDQ SAMVYLLATQ RDAWGNKVYL ESGYYLHGYW GILVDRYEEM IENYHPGLGD HRWPLVTHFV GCKPCGKFGD YPVERCLKQM
401: DRAFNFGDNQ ILQIYGFTHK SLASRKVKRV RNETSNPLEM KDELGLLHPA FKAVKVQTNQ V
Arabidopsis Description
XXT2Xyloglucan 6-xylosyltransferase 2 [Source:UniProtKB/Swiss-Prot;Acc:O22775]
SUBAcon: [mitochondrion]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.