CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: golgi

Predictor Summary:

plastid 1
mitochondrion 3
golgi 2
cytosol 1
endoplasmic reticulum 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
EER92398	golgi, golgi
EES06903	golgi, golgi
EES15672	golgi, golgi
EES16639	golgi, golgi

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G62720.1	EES06903	AT1G74380.1	22665445
AT3G62720.1	EES15672	AT1G74380.1	22665445
AT3G62720.1	EES16639	AT1G74380.1	22665445
AT3G62720.1	EER92398	AT4G02500.1	22665445
AT4G02500.1	EES06903	AT1G74380.1	22665445
AT4G02500.1	EES15672	AT1G74380.1	22665445
AT4G02500.1	EES16639	AT1G74380.1	22665445
AT4G02500.1	EER92398	AT4G02500.1	22665445

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d028811_P001	Maize	plasma membrane	98.43	98.21
Zm00001d047694_P001	Maize	golgi	98.43	97.99
Zm00001d025851_P001	Maize	cytosol	78.92	97.24
Zm00001d026023_P001	Maize	endoplasmic reticulum, golgi	57.62	96.98
Zm00001d051264_P001	Maize	mitochondrion, plastid	83.86	94.21
Os03t0300000-01	Rice	cytosol	73.32	93.97
Zm00001d035801_P001	Maize	mitochondrion, nucleus, plastid	38.79	89.64
HORVU4Hr1G054910.1	Barley	golgi, mitochondrion	88.12	86.95
TraesCS4A01G116100.2	Wheat	golgi, mitochondrion	87.67	86.5
TraesCS4D01G189500.1	Wheat	golgi, mitochondrion	87.44	86.47
TraesCS4B01G188100.1	Wheat	golgi, mitochondrion	87.22	86.25
TraesCS1B01G115300.1	Wheat	golgi, mitochondrion	87.22	83.3
GSMUA_Achr1P24760_001	Banana	mitochondrion	78.7	81.25
CDY11443	Canola	cytosol	10.54	79.66
GSMUA_Achr8P22410_001	Banana	golgi, mitochondrion	74.22	77.16
CDY22055	Canola	mitochondrion	75.78	75.28
CDX90935	Canola	mitochondrion	75.78	75.28
CDY18017	Canola	mitochondrion	56.28	74.93
AT4G02500.1	Thale cress	mitochondrion	76.46	73.97
Bra036262.1-P	Field mustard	mitochondrion	76.46	73.81
VIT_07s0005g00150.t01	Wine grape	mitochondrion	74.66	73.67
Bra000877.1-P	Field mustard	mitochondrion	76.46	73.65
KRH37112	Soybean	golgi, mitochondrion	74.22	73.56
Bra018545.1-P	Field mustard	mitochondrion	75.78	73.16
KRG96428	Soybean	mitochondrion	73.99	72.53
CDY50378	Canola	cytosol	76.01	72.28
VIT_05s0020g01530.t01	Wine grape	mitochondrion	74.44	71.24
Bra007696.1-P	Field mustard	mitochondrion	72.2	70.61
PGSC0003DMT400058812	Potato	mitochondrion	73.32	70.47
AT3G62720.1	Thale cress	mitochondrion	72.65	70.43
CDX76657	Canola	mitochondrion	30.04	69.79
CDY70090	Canola	mitochondrion	55.16	69.49
CDX93965	Canola	mitochondrion	71.3	69.43
Bra014396.1-P	Field mustard	mitochondrion	70.85	68.85
CDY70418	Canola	golgi, mitochondrion	70.63	68.48
CDX97271	Canola	mitochondrion	40.81	67.66
CDY65940	Canola	mitochondrion	38.56	64.66
KRH12052	Soybean	mitochondrion	37.89	63.3
KRH68171	Soybean	golgi, mitochondrion	30.49	56.43
CDY11442	Canola	cytosol, extracellular, mitochondrion, plastid	10.54	55.29
Solyc01g067930.2.1	Tomato	mitochondrion	24.44	51.9
CDY11441	Canola	mitochondrion	21.52	50.79
EES06903	Sorghum	plastid	53.59	49.79
EES16639	Sorghum	golgi	51.35	49.25
EER92376	Sorghum	golgi	48.65	48.65
EES00270	Sorghum	golgi, mitochondrion	47.76	47.02
EER92377	Sorghum	golgi	45.07	45.07
EES15672	Sorghum	mitochondrion	44.17	38.25
EES07343	Sorghum	golgi	36.32	36.57
EES08636	Sorghum	plastid	36.77	36.53
OQU83607	Sorghum	plastid	34.98	33.84
OQU83610	Sorghum	cytosol, golgi, peroxisome, plastid	36.32	33.82

Protein Annotations

MapMan:21.2.1.1.2	Gene3D:3.90.550.10	EntrezGene:8084015	UniProt:C5WNE6	EnsemblPlants:EER92398	ProteinID:EER92398
ProteinID:EER92398.1	GO:GO:0003674	GO:GO:0003824	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0005768	GO:GO:0005794	GO:GO:0005802	GO:GO:0005975	GO:GO:0007275
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009653	GO:GO:0009969	GO:GO:0009987
GO:GO:0016020	GO:GO:0016021	GO:GO:0016049	GO:GO:0016740	GO:GO:0016757	GO:GO:0016758
GO:GO:0030154	GO:GO:0033843	GO:GO:0035252	GO:GO:0040007	GO:GO:0048767	InterPro:Glyco_trans_34
InterPro:IPR029044	InterPro:Nucleotide-diphossugar_trans	PFAM:PF05637	PANTHER:PTHR31311	PANTHER:PTHR31311:SF6	EnsemblPlantsGene:SORBI_3001G401600
TMHMM:TMhelix	UniParc:UPI0001A82B9B	RefSeq:XP_002465400.1	SEG:seg	:	:

Description

hypothetical protein

Coordinates

chr1:+:68708279..68710984

Molecular Weight (calculated)

51597.9 Da

IEP (calculated)

8.279

GRAVY (calculated)

-0.495

Length

446 amino acids

Sequence
(BLAST)

001: MWAERVVGER RMRQIQRFAR NAKLTVVCLL LTVVVLRGTV GAGRFGTPQQ DLIELRQHFV SHPHRALAEH HDARSRASTT TTSSSSSVRR DDEPDPPPRT
101: LRDPPYTLGP KISDWDEQRA AWHRRHPETP PFLNDIKPRV LLVTGSSPKP CENPVGDHYL LKSIKNKMDY CRVHGIEVFY NMALLDAEMA GFWAKLPLLR
201: ALLLAHPEFE FIWWMDSDAM FTDMAFELPW ERYGPYNLIM HGWDEMVYDD KNWIGLNTGS FLLRNCQWSL DMLDTWAPMG PKGPVRIEAG KVLTKSLKDR
301: PVFEADDQSA MVYILATQRE KWGDKVYLEN GYYLHGYWGI LVDRYEEMLE NYKPGLGDHR WPLVTHFVGC KPCGKFGDYP VERCLKNMDR AFNFGDNQIL
401: QMYGFTHKSL ASRRVKRIRN ETSNPLETKD ELGLLHPAFK AVKTST

Best Arabidopsis Sequence Match ( AT4G02500.1 )
(BLAST)

001: MIERCLGAYR CRRIQRALRQ LKVTILCLLL TVVVLRSTIG AGKFGTPEQD LDEIRQHFHA RKRGEPHRVL EEIQTGGDSS SGDGGGNSGG SNNYETFDIN
101: KIFVDEGEEE KPDPNKPYTL GPKISDWDEQ RSDWLAKNPS FPNFIGPNKP RVLLVTGSAP KPCENPVGDH YLLKSIKNKI DYCRLHGIEI FYNMALLDAE
201: MAGFWAKLPL IRKLLLSHPE IEFLWWMDSD AMFTDMAFEL PWERYKDYNL VMHGWNEMVY DQKNWIGLNT GSFLLRNNQW ALDLLDTWAP MGPKGKIREE
301: AGKVLTRELK DRPVFEADDQ SAMVYLLATQ RDAWGNKVYL ESGYYLHGYW GILVDRYEEM IENYHPGLGD HRWPLVTHFV GCKPCGKFGD YPVERCLKQM
401: DRAFNFGDNQ ILQIYGFTHK SLASRKVKRV RNETSNPLEM KDELGLLHPA FKAVKVQTNQ V

Arabidopsis Description

XXT2Xyloglucan 6-xylosyltransferase 2 [Source:UniProtKB/Swiss-Prot;Acc:O22775]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.