Factsheet for VIT_05s0020g01530.t01

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 2
mitochondrion 4
golgi 1
cytosol 2

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_05s0020g01530.t01	golgi, golgi
VIT_07s0005g00150.t01	golgi, golgi
VIT_17s0000g06590.t01	golgi, golgi

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G62720.1	VIT_17s0000g06590.t01	AT1G74380.1	22665445
AT3G62720.1	VIT_05s0020g01530.t01	AT4G02500.1	22665445
AT3G62720.1	VIT_07s0005g00150.t01	AT4G02500.1	22665445
AT4G02500.1	VIT_17s0000g06590.t01	AT1G74380.1	22665445
AT4G02500.1	VIT_05s0020g01530.t01	AT4G02500.1	22665445
AT4G02500.1	VIT_07s0005g00150.t01	AT4G02500.1	22665445

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_07s0005g00150.t01	Wine grape	mitochondrion	84.98	87.61
Zm00001d026023_P001	Maize	endoplasmic reticulum, golgi	47.85	84.15
CDX90935	Canola	mitochondrion	80.69	83.74
AT4G02500.1	Thale cress	mitochondrion	82.83	83.73
KRH37112	Soybean	golgi, mitochondrion	79.83	82.67
Bra000877.1-P	Field mustard	mitochondrion	81.97	82.51
Os03t0300000-01	Rice	cytosol	61.59	82.47
Bra018545.1-P	Field mustard	mitochondrion	81.55	82.25
Bra036262.1-P	Field mustard	mitochondrion	81.12	81.82
CDY22055	Canola	mitochondrion	78.54	81.51
GSMUA_Achr1P24760_001	Banana	mitochondrion	75.54	81.48
CDY70090	Canola	mitochondrion	61.8	81.36
CDY18017	Canola	mitochondrion	57.73	80.3
PGSC0003DMT400058812	Potato	mitochondrion	79.4	79.74
Bra007696.1-P	Field mustard	mitochondrion	77.68	79.39
AT3G62720.1	Thale cress	mitochondrion	77.68	78.7
KRH12052	Soybean	mitochondrion	44.85	78.28
CDY11443	Canola	cytosol	9.87	77.97
CDY50378	Canola	cytosol	78.11	77.61
GSMUA_Achr8P22410_001	Banana	golgi, mitochondrion	71.24	77.39
Bra014396.1-P	Field mustard	mitochondrion	76.18	77.34
CDX93965	Canola	mitochondrion	75.54	76.86
CDY70418	Canola	golgi, mitochondrion	75.75	76.74
Zm00001d025851_P001	Maize	cytosol	58.58	75.41
Zm00001d028811_P001	Maize	plasma membrane	71.67	74.72
EER92398	Sorghum	golgi	71.24	74.44
Zm00001d047694_P001	Maize	golgi	71.46	74.33
Zm00001d051264_P001	Maize	mitochondrion, plastid	63.09	74.06
CDY65940	Canola	mitochondrion	41.85	73.31
CDX97271	Canola	mitochondrion	42.27	73.23
CDX76657	Canola	mitochondrion	29.18	70.83
HORVU4Hr1G054910.1	Barley	golgi, mitochondrion	68.67	70.8
TraesCS4B01G188100.1	Wheat	golgi, mitochondrion	68.45	70.73
TraesCS4D01G189500.1	Wheat	golgi, mitochondrion	68.24	70.51
TraesCS4A01G116100.2	Wheat	golgi, mitochondrion	68.03	70.13
Solyc01g067930.2.1	Tomato	mitochondrion	30.9	68.57
TraesCS1B01G115300.1	Wheat	golgi, mitochondrion	68.24	68.09
CDY11441	Canola	mitochondrion	26.82	66.14
Zm00001d035801_P001	Maize	mitochondrion, nucleus, plastid	25.54	61.66
CDY11442	Canola	cytosol, extracellular, mitochondrion, plastid	10.52	57.65
VIT_17s0000g06590.t01	Wine grape	cytosol, golgi, plasma membrane, plastid	53.86	55.78
VIT_00s0322g00030.t01	Wine grape	mitochondrion	24.25	32.94

Protein Annotations

EntrezGene:100232895	wikigene:100232895	MapMan:21.2.1.1.2	Gene3D:3.90.550.10	EMBL:AJ864705	EMBL:AM486261
ProteinID:CAI11449	ProteinID:CAI11449.1	ProteinID:CAN77730	ProteinID:CAN77730.1	ProteinID:CCB50327	ProteinID:CCB50327.1
UniProt:F6HDF7	EMBL:FN595749	GO:GO:0003674	GO:GO:0003824	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0005768	GO:GO:0005794	GO:GO:0005802	GO:GO:0005975
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009969	GO:GO:0009987	GO:GO:0016020
GO:GO:0016021	GO:GO:0016740	GO:GO:0016757	GO:GO:0016758	GO:GO:0033843	GO:GO:0035252
InterPro:Glyco_trans_34	InterPro:IPR029044	InterPro:Nucleotide-diphossugar_trans	PFAM:PF05637	PANTHER:PTHR31311	PANTHER:PTHR31311:SF6
TIGR:TC51768	TMHMM:TMhelix	UniParc:UPI0002108D74	ArrayExpress:VIT_05s0020g01530	EnsemblPlantsGene:VIT_05s0020g01530	EnsemblPlants:VIT_05s0020g01530.t01
unigene:Vvi.5765	EntrezGene:X34.1	wikigene:X34.1	SEG:seg	:	:

Description

No Description!

Coordinates

chr5:+:3197061..3199170

Molecular Weight (calculated)

54272.1 Da

IEP (calculated)

7.630

GRAVY (calculated)

-0.545

Length

466 amino acids

Sequence
(BLAST)

001: MLDWCFGARR VRQMQRAFRH GKITLMCLLM TVVVLRGTIG AGKFGTPEQD FNEIREHFHN RKRVEPHRVL EEAEVSTESS ESNNYATFDI SKLTVDEGED
101: EKPDPNKPYS LGPKISDWDE QRAEWLRKNP NFPNFIGPNK PRVLLVTGSS PKPCENPVGD HYLLKAIKNK IDYCRLHGIE IFYNMALLDA EMAGFWAKLP
201: LIRKLLLSHP EIEFLWWMDS DAMFTDMAFE VPWERYKDHN FVMHGWNEMV YDQKNWIGLN TGSFLLRNCQ WALDILDAWA PMGPKGKIRT EAGKILTREL
301: KDRPVFEADD QSAMVYLLAT QRDNWGDKVY LESAYYLHGY WGILVDRYEE MIKNHHPGLG DHRWPLVTHF VGCKPCGKFG DYPVERCLKQ MDRAFNFGDN
401: QILQIYGFTH KSLASRRVKR TRNDTSNPLE VKDDLGLLHP AFKAVKVTDR LLSQNEMGWN RKNVNL

Best Arabidopsis Sequence Match ( AT4G02500.1 )
(BLAST)

001: MIERCLGAYR CRRIQRALRQ LKVTILCLLL TVVVLRSTIG AGKFGTPEQD LDEIRQHFHA RKRGEPHRVL EEIQTGGDSS SGDGGGNSGG SNNYETFDIN
101: KIFVDEGEEE KPDPNKPYTL GPKISDWDEQ RSDWLAKNPS FPNFIGPNKP RVLLVTGSAP KPCENPVGDH YLLKSIKNKI DYCRLHGIEI FYNMALLDAE
201: MAGFWAKLPL IRKLLLSHPE IEFLWWMDSD AMFTDMAFEL PWERYKDYNL VMHGWNEMVY DQKNWIGLNT GSFLLRNNQW ALDLLDTWAP MGPKGKIREE
301: AGKVLTRELK DRPVFEADDQ SAMVYLLATQ RDAWGNKVYL ESGYYLHGYW GILVDRYEEM IENYHPGLGD HRWPLVTHFV GCKPCGKFGD YPVERCLKQM
401: DRAFNFGDNQ ILQIYGFTHK SLASRKVKRV RNETSNPLEM KDELGLLHPA FKAVKVQTNQ V

Arabidopsis Description

XXT2Xyloglucan 6-xylosyltransferase 2 [Source:UniProtKB/Swiss-Prot;Acc:O22775]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.