Factsheet for GSMUA_Achr1P24760_001

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 1
mitochondrion 5
golgi 2

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr10P...	golgi, golgi
GSMUA_Achr10P...	golgi, golgi
GSMUA_Achr11P...	golgi, golgi
GSMUA_Achr1P24760_001	golgi, golgi
GSMUA_Achr3P22760_001	golgi, golgi
GSMUA_Achr8P22410_001	golgi, golgi

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G62720.1	GSMUA_Achr10P...	AT1G74380.1	22665445
AT3G62720.1	GSMUA_Achr10P...	AT1G74380.1	22665445
AT3G62720.1	GSMUA_Achr11P...	AT1G74380.1	22665445
AT3G62720.1	GSMUA_Achr3P22760_001	AT1G74380.1	22665445
AT3G62720.1	GSMUA_Achr1P24760_001	AT4G02500.1	22665445
AT3G62720.1	GSMUA_Achr8P22410_001	AT4G02500.1	22665445
AT4G02500.1	GSMUA_Achr10P...	AT1G74380.1	22665445
AT4G02500.1	GSMUA_Achr10P...	AT1G74380.1	22665445
AT4G02500.1	GSMUA_Achr11P...	AT1G74380.1	22665445
AT4G02500.1	GSMUA_Achr3P22760_001	AT1G74380.1	22665445
AT4G02500.1	GSMUA_Achr1P24760_001	AT4G02500.1	22665445
AT4G02500.1	GSMUA_Achr8P22410_001	AT4G02500.1	22665445

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Os03t0300000-01	Rice	cytosol	69.91	86.78
Zm00001d026023_P001	Maize	endoplasmic reticulum, golgi	53.01	86.42
GSMUA_Achr8P22410_001	Banana	golgi, mitochondrion	83.56	84.15
Zm00001d025851_P001	Maize	cytosol	66.9	79.83
EER92398	Sorghum	golgi	81.25	78.7
Zm00001d047694_P001	Maize	golgi	81.48	78.57
Zm00001d028811_P001	Maize	plasma membrane	81.25	78.52
Zm00001d051264_P001	Maize	mitochondrion, plastid	71.99	78.34
VIT_07s0005g00150.t01	Wine grape	mitochondrion	80.56	76.99
CDX90935	Canola	mitochondrion	79.4	76.39
CDY11443	Canola	cytosol	10.42	76.27
CDY22055	Canola	mitochondrion	79.17	76.17
VIT_05s0020g01530.t01	Wine grape	mitochondrion	81.48	75.54
AT4G02500.1	Thale cress	mitochondrion	80.56	75.49
KRH37112	Soybean	golgi, mitochondrion	78.47	75.33
Bra000877.1-P	Field mustard	mitochondrion	80.09	74.73
Bra036262.1-P	Field mustard	mitochondrion	79.86	74.68
Bra018545.1-P	Field mustard	mitochondrion	79.63	74.46
TraesCS4D01G189500.1	Wheat	golgi, mitochondrion	77.08	73.84
CDY18017	Canola	mitochondrion	57.18	73.73
TraesCS4A01G116100.2	Wheat	golgi, mitochondrion	77.08	73.67
TraesCS4B01G188100.1	Wheat	golgi, mitochondrion	76.85	73.61
CDY50378	Canola	cytosol	79.86	73.56
HORVU4Hr1G054910.1	Barley	golgi, mitochondrion	76.85	73.45
KRG96428	Soybean	mitochondrion	77.31	73.41
Bra007696.1-P	Field mustard	mitochondrion	76.62	72.59
AT3G62720.1	Thale cress	mitochondrion	77.08	72.39
PGSC0003DMT400058812	Potato	mitochondrion	77.31	71.98
CDX93965	Canola	mitochondrion	75.93	71.62
Bra014396.1-P	Field mustard	mitochondrion	75.93	71.46
CDY70418	Canola	golgi, mitochondrion	75.93	71.3
TraesCS1B01G115300.1	Wheat	golgi, mitochondrion	76.85	71.09
CDX76657	Canola	mitochondrion	31.48	70.83
CDY70090	Canola	mitochondrion	57.64	70.34
KRH12052	Soybean	mitochondrion	41.44	67.04
Zm00001d035801_P001	Maize	mitochondrion, nucleus, plastid	29.63	66.32
CDX97271	Canola	mitochondrion	40.97	65.8
CDY65940	Canola	mitochondrion	38.89	63.16
KRH68171	Soybean	golgi, mitochondrion	33.1	59.34
GSMUA_Achr10P...	Banana	cytosol	56.71	56.45
CDY11442	Canola	cytosol, extracellular, mitochondrion, plastid	10.88	55.29
Solyc01g067930.2.1	Tomato	mitochondrion	26.39	54.29
CDY11441	Canola	mitochondrion	23.38	53.44
GSMUA_Achr3P22760_001	Banana	cytosol	55.79	52.51
GSMUA_Achr10P...	Banana	plastid	57.87	49.6
GSMUA_Achr11P...	Banana	cytosol	57.64	49.02
GSMUA_Achr3P30030_001	Banana	golgi	39.81	43.32
GSMUA_Achr3P30020_001	Banana	cytosol, golgi, plastid	38.89	37.84
GSMUA_Achr1P12580_001	Banana	golgi, plastid, vacuole	37.27	36.18

Protein Annotations

EnsemblPlants:GSMUA_Achr1P24760_001	EnsemblPlants:GSMUA_Achr1T24760_001	EnsemblPlantsGene:GSMUA_Achr1G24760_001	Gene3D:3.90.550.10	GO:GO:0003674	GO:GO:0003824
GO:GO:0005575	GO:GO:0016020	GO:GO:0016021	GO:GO:0016740	GO:GO:0016757	InterPro:Glyco_trans_34
InterPro:IPR029044	InterPro:Nucleotide-diphossugar_trans	PANTHER:PTHR31311	PANTHER:PTHR31311:SF6	PFAM:PF05637	SEG:seg
TMHMM:TMhelix	UniParc:UPI000296F0E0	UniProt:M0S2T3	MapMan:21.2.1.1.2	:	:

Description

Xyloglucan 6-xylosyltransferase [Source:GMGC_GENE;Acc:GSMUA_Achr1G24760_001]

Coordinates

chr1:-:19223658..19226671

Molecular Weight (calculated)

49894.0 Da

IEP (calculated)

7.616

GRAVY (calculated)

-0.397

Length

432 amino acids

Sequence
(BLAST)

001: MWLGRCVGER RVWHLRRALR SAKLTLLCLA LTVLVLRGTV GAGRFGTPEQ DLNQIRLRLR RPLVETTISS SNSLDDSEED PPRDPSQPYS LGPKISDWDE
101: QRADWLRRHP ERPSFLGPNK PRVLLVTGSS PKPCENPVGD HYLLKSIKNK IDYCRVHGIE IFYNMALLDA EMAGFWAKLP LIRSLLLAHP EVEFLWWMDS
201: DAMFTDMAFE LPWERYAPYN LVMHGWNEMV YDDHNWIGLN TGSFLLRNCQ WSLDLLDAWA PMGPKGKTRT EAGKVLTAFL KDRPVFEADD QSAMVYLLAT
301: RRDQWGDKVY LESAYYLHGY WGILVDRYEE MIENHHPGLG DHRWPLVTHF VGCKPCGKFG DYPVERCLKQ MDRAFNFGDN QILQIYGFTH KSLASRRVKR
401: IRNETSNPLD VKDELGLLHP VFKATKVIDA AH

Best Arabidopsis Sequence Match ( AT4G02500.1 )
(BLAST)

001: MIERCLGAYR CRRIQRALRQ LKVTILCLLL TVVVLRSTIG AGKFGTPEQD LDEIRQHFHA RKRGEPHRVL EEIQTGGDSS SGDGGGNSGG SNNYETFDIN
101: KIFVDEGEEE KPDPNKPYTL GPKISDWDEQ RSDWLAKNPS FPNFIGPNKP RVLLVTGSAP KPCENPVGDH YLLKSIKNKI DYCRLHGIEI FYNMALLDAE
201: MAGFWAKLPL IRKLLLSHPE IEFLWWMDSD AMFTDMAFEL PWERYKDYNL VMHGWNEMVY DQKNWIGLNT GSFLLRNNQW ALDLLDTWAP MGPKGKIREE
301: AGKVLTRELK DRPVFEADDQ SAMVYLLATQ RDAWGNKVYL ESGYYLHGYW GILVDRYEEM IENYHPGLGD HRWPLVTHFV GCKPCGKFGD YPVERCLKQM
401: DRAFNFGDNQ ILQIYGFTHK SLASRKVKRV RNETSNPLEM KDELGLLHPA FKAVKVQTNQ V

Arabidopsis Description

XXT2Xyloglucan 6-xylosyltransferase 2 [Source:UniProtKB/Swiss-Prot;Acc:O22775]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.