Factsheet for PGSC0003DMT400058812

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 1
mitochondrion 5
golgi 2
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
PGSC0003DMT400041333	golgi, golgi
PGSC0003DMT400058812	golgi, golgi
PGSC0003DMT400063414	golgi, golgi
PGSC0003DMT400073000	golgi, golgi

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G62720.1	PGSC0003DMT400041333	AT1G74380.1	22665445
AT3G62720.1	PGSC0003DMT400063414	AT1G74380.1	22665445
AT3G62720.1	PGSC0003DMT400073000	AT1G74380.1	22665445
AT3G62720.1	PGSC0003DMT400058812	AT4G02500.1	22665445
AT4G02500.1	PGSC0003DMT400041333	AT1G74380.1	22665445
AT4G02500.1	PGSC0003DMT400063414	AT1G74380.1	22665445
AT4G02500.1	PGSC0003DMT400073000	AT1G74380.1	22665445
AT4G02500.1	PGSC0003DMT400058812	AT4G02500.1	22665445

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc01g067930.2.1	Tomato	mitochondrion	43.53	96.19
Zm00001d026023_P001	Maize	endoplasmic reticulum, golgi	48.28	84.53
Os03t0300000-01	Rice	cytosol	62.28	83.05
VIT_07s0005g00150.t01	Wine grape	mitochondrion	79.96	82.08
CDX90935	Canola	mitochondrion	77.37	79.96
AT4G02500.1	Thale cress	mitochondrion	79.31	79.83
CDY11443	Canola	cytosol	10.13	79.66
KRH37112	Soybean	golgi, mitochondrion	77.16	79.56
Bra018545.1-P	Field mustard	mitochondrion	79.09	79.44
VIT_05s0020g01530.t01	Wine grape	mitochondrion	79.74	79.4
Bra000877.1-P	Field mustard	mitochondrion	78.88	79.05
CDY22055	Canola	mitochondrion	76.29	78.84
Bra036262.1-P	Field mustard	mitochondrion	78.45	78.79
CDY70090	Canola	mitochondrion	59.05	77.4
GSMUA_Achr1P24760_001	Banana	mitochondrion	71.98	77.31
CDY18017	Canola	mitochondrion	55.6	77.01
Bra007696.1-P	Field mustard	mitochondrion	75.43	76.75
AT3G62720.1	Thale cress	mitochondrion	76.08	76.74
KRG96428	Soybean	mitochondrion	74.57	76.04
Bra014396.1-P	Field mustard	mitochondrion	74.35	75.16
CDY70418	Canola	golgi, mitochondrion	74.14	74.78
CDX93965	Canola	mitochondrion	73.71	74.67
CDY50378	Canola	cytosol	75.0	74.2
KRH12052	Soybean	mitochondrion	42.67	74.16
Zm00001d025851_P001	Maize	cytosol	57.76	74.03
Zm00001d028811_P001	Maize	plasma membrane	70.91	73.6
GSMUA_Achr8P22410_001	Banana	golgi, mitochondrion	67.89	73.43
EER92398	Sorghum	golgi	70.47	73.32
Zm00001d051264_P001	Maize	mitochondrion, plastid	62.72	73.3
Zm00001d047694_P001	Maize	golgi	70.69	73.21
CDX97271	Canola	mitochondrion	41.81	72.12
CDY65940	Canola	mitochondrion	40.95	71.43
HORVU4Hr1G054910.1	Barley	golgi, mitochondrion	68.53	70.35
TraesCS4B01G188100.1	Wheat	golgi, mitochondrion	67.89	69.84
TraesCS4D01G189500.1	Wheat	golgi, mitochondrion	67.67	69.62
TraesCS4A01G116100.2	Wheat	golgi, mitochondrion	67.67	69.47
TraesCS1B01G115300.1	Wheat	golgi, mitochondrion	67.67	67.24
CDX76657	Canola	mitochondrion	27.8	67.19
KRH68171	Soybean	golgi, mitochondrion	33.84	65.15
CDY11441	Canola	mitochondrion	25.65	62.96
PGSC0003DMT400073000	Potato	cytosol	31.9	61.41
Zm00001d035801_P001	Maize	mitochondrion, nucleus, plastid	25.0	60.1
CDY11442	Canola	cytosol, extracellular, mitochondrion, plastid	10.99	60.0
PGSC0003DMT400063414	Potato	plastid	53.88	55.56
PGSC0003DMT400041333	Potato	plastid	53.02	54.19
PGSC0003DMT400023470	Potato	endoplasmic reticulum	22.2	38.15
PGSC0003DMT400055223	Potato	golgi	32.54	34.32
PGSC0003DMT400085728	Potato	golgi, mitochondrion	31.47	32.96

Protein Annotations

EntrezGene:102583005	MapMan:21.2.1.1.2	Gene3D:3.90.550.10	GO:GO:0003674	GO:GO:0003824	GO:GO:0005575
GO:GO:0007275	GO:GO:0008150	GO:GO:0009653	GO:GO:0009987	GO:GO:0016020	GO:GO:0016021
GO:GO:0016049	GO:GO:0016740	GO:GO:0016757	GO:GO:0030154	GO:GO:0040007	GO:GO:0048767
InterPro:Glyco_trans_34	InterPro:IPR029044	UniProt:M1C3C5	InterPro:Nucleotide-diphossugar_trans	PFAM:PF05637	EnsemblPlantsGene:PGSC0003DMG400022852
PGSC:PGSC0003DMG400022852	EnsemblPlants:PGSC0003DMT400058812	PANTHER:PTHR31311	PANTHER:PTHR31311:SF6	TMHMM:TMhelix	UniParc:UPI00029648F2
RefSeq:XP_006356974.1	SEG:seg	:	:	:	:

Description

Xylosyl transferase [Source:PGSC_GENE;Acc:PGSC0003DMG400022852]

Coordinates

chr1:+:60026608..60028730

Molecular Weight (calculated)

53621.2 Da

IEP (calculated)

7.050

GRAVY (calculated)

-0.491

Length

464 amino acids

Sequence
(BLAST)

001: MLDRFLSARR AWQVRRIMRN GKLTFLCLFL TVIVLRGNLG AGRFGTPGQD LKEIRETFSY YRKRVEPRRV LEEAQQVSST STVSDGGDSS SDSNNYATFD
101: LKKILVDEDD GEPEFKRDPN QPYALGPKIT DWDEQRGEWL KKNPNFPNFV GTNKPRVLLV TGSSPKPCEN PVGDHYLLKS IKNKIDYCRL HGMEIFYNMA
201: LLDAEMAGFW AKLPLLRKLL LSHPEVEFLW WMDSDAMFTD MAFELPWERY KDANLVMHGW NEMVYDQKNW IGLNTGSFLL RNTQWALDLL DVLAPMGPKG
301: KVREEAGALL TRELKDRPVF EADDQSAMVY ILATQKEIWG DKVYLENAYY LHGYWGILVD KYEEMIENYH PGLGDHRWPL VTHFVGCKPC AKFGDYSVER
401: CLKQMDRAFN FGDNQILQMY GFTHKSLGSR RVKRTRNETS NPLEVNDELG LLHPPFKAVK VPSS

Best Arabidopsis Sequence Match ( AT4G02500.1 )
(BLAST)

001: MIERCLGAYR CRRIQRALRQ LKVTILCLLL TVVVLRSTIG AGKFGTPEQD LDEIRQHFHA RKRGEPHRVL EEIQTGGDSS SGDGGGNSGG SNNYETFDIN
101: KIFVDEGEEE KPDPNKPYTL GPKISDWDEQ RSDWLAKNPS FPNFIGPNKP RVLLVTGSAP KPCENPVGDH YLLKSIKNKI DYCRLHGIEI FYNMALLDAE
201: MAGFWAKLPL IRKLLLSHPE IEFLWWMDSD AMFTDMAFEL PWERYKDYNL VMHGWNEMVY DQKNWIGLNT GSFLLRNNQW ALDLLDTWAP MGPKGKIREE
301: AGKVLTRELK DRPVFEADDQ SAMVYLLATQ RDAWGNKVYL ESGYYLHGYW GILVDRYEEM IENYHPGLGD HRWPLVTHFV GCKPCGKFGD YPVERCLKQM
401: DRAFNFGDNQ ILQIYGFTHK SLASRKVKRV RNETSNPLEM KDELGLLHPA FKAVKVQTNQ V

Arabidopsis Description

XXT2Xyloglucan 6-xylosyltransferase 2 [Source:UniProtKB/Swiss-Prot;Acc:O22775]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.