Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- cytosol 4
- golgi 1
- plastid 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| PGSC0003DMT400041333 | golgi |
| PGSC0003DMT400063414 | golgi |
| PGSC0003DMT400073000 | golgi |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT1G74380.1 | PGSC0003DMT400041333 | AT1G74380.1 | 22665445 |
| AT1G74380.1 | PGSC0003DMT400063414 | AT1G74380.1 | 22665445 |
| AT1G74380.1 | PGSC0003DMT400073000 | AT1G74380.1 | 22665445 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| HORVU6Hr1G040960.1 | Barley | cytosol | 71.78 | 72.08 |
| CDX73082 | Canola | cytosol | 64.32 | 69.82 |
| CDX96540 | Canola | cytosol | 64.32 | 69.82 |
| Bra008146.1-P | Field mustard | cytosol | 64.32 | 69.51 |
| CDX68187 | Canola | cytosol | 64.32 | 69.51 |
| CDX85826 | Canola | cytosol | 64.32 | 69.51 |
| CDY49114 | Canola | peroxisome | 33.2 | 57.14 |
| Solyc05g013020.1.1 | Tomato | golgi, mitochondrion, plastid | 95.44 | 51.45 |
| VIT_17s0000g06590.t01 | Wine grape | cytosol, golgi, plasma membrane, plastid | 81.33 | 43.56 |
| KRH56886 | Soybean | endoplasmic reticulum | 78.01 | 42.06 |
| PGSC0003DMT400041333 | Potato | plastid | 78.84 | 41.85 |
| KRH03516 | Soybean | mitochondrion | 77.59 | 41.83 |
| PGSC0003DMT400063414 | Potato | plastid | 76.76 | 41.11 |
| AT5G07720.1 | Thale cress | cytosol, plastid | 76.76 | 40.48 |
| CDX99024 | Canola | cytosol, golgi, peroxisome, plastid | 75.52 | 40.09 |
| AT1G74380.1 | Thale cress | plastid | 75.93 | 40.04 |
| Bra009305.1-P | Field mustard | cytosol | 75.52 | 40.0 |
| CDX69995 | Canola | cytosol | 75.52 | 40.0 |
| Bra015915.1-P | Field mustard | plastid | 75.52 | 39.91 |
| GSMUA_Achr10P... | Banana | cytosol | 70.95 | 39.4 |
| Bra003804.1-P | Field mustard | plastid | 74.69 | 39.39 |
| CDY19235 | Canola | cytosol, golgi, plasma membrane, plastid | 73.03 | 38.94 |
| PGSC0003DMT400023470 | Potato | endoplasmic reticulum | 42.32 | 37.78 |
| TraesCS5B01G128600.1 | Wheat | golgi, mitochondrion | 69.71 | 37.75 |
| CDY26738 | Canola | golgi, mitochondrion, plasma membrane, plastid | 75.1 | 37.55 |
| TraesCS5D01G137300.1 | Wheat | golgi, mitochondrion | 69.29 | 37.53 |
| TraesCS5A01G129800.1 | Wheat | mitochondrion | 69.29 | 37.53 |
| HORVU5Hr1G042000.1 | Barley | golgi, mitochondrion | 68.88 | 37.47 |
| Zm00001d016687_P001 | Maize | plasma membrane | 73.44 | 37.03 |
| EES06903 | Sorghum | plastid | 73.44 | 36.88 |
| GSMUA_Achr3P22760_001 | Banana | cytosol | 70.12 | 36.82 |
| Os02t0529600-01 | Rice | golgi, peroxisome, plastid | 72.61 | 36.46 |
| TraesCS6A01G196600.1 | Wheat | plastid | 71.78 | 36.19 |
| TraesCS6D01G181200.1 | Wheat | plastid | 71.37 | 35.98 |
| Bra025677.1-P | Field mustard | golgi, mitochondrion, plasma membrane, plastid | 74.69 | 35.79 |
| TraesCS6B01G221000.1 | Wheat | plastid | 70.95 | 35.77 |
| AT1G18690.4 | Thale cress | golgi, plastid | 75.52 | 35.48 |
| Os12t0149300-01 | Rice | golgi | 66.81 | 34.55 |
| GSMUA_Achr10P... | Banana | plastid | 72.2 | 34.52 |
| GSMUA_Achr11P... | Banana | cytosol | 71.37 | 33.86 |
| EES16639 | Sorghum | golgi | 62.24 | 32.26 |
| Zm00001d023399_P001 | Maize | golgi, mitochondrion | 61.0 | 32.24 |
| Zm00001d023417_P001 | Maize | golgi, mitochondrion | 60.58 | 32.02 |
| PGSC0003DMT400058812 | Potato | mitochondrion | 61.41 | 31.9 |
| EES15672 | Sorghum | mitochondrion | 55.19 | 25.83 |
| PGSC0003DMT400085728 | Potato | golgi, mitochondrion | 45.64 | 24.83 |
| Zm00001d023398_P001 | Maize | mitochondrion | 52.28 | 24.56 |
| PGSC0003DMT400055223 | Potato | golgi | 41.49 | 22.73 |
| Zm00001d043041_P001 | Maize | nucleus | 25.31 | 20.68 |
| Zm00001d023418_P001 | Maize | nucleus | 53.11 | 12.42 |
Protein Annotations
| EnsemblPlants:PGSC0003DMT400073000 | EnsemblPlantsGene:PGSC0003DMG400028392 | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0005575 | GO:GO:0016020 |
| GO:GO:0016021 | GO:GO:0016740 | GO:GO:0016757 | InterPro:Glyco_trans_34 | PANTHER:PTHR31311 | PANTHER:PTHR31311:SF4 |
| PFAM:PF05637 | PGSC:PGSC0003DMG400028392 | UniParc:UPI0002949ECE | UniProt:M1CRC9 | MapMan:35.1 | : |
Description
Xyloglucan 6-xylosyltransferase [Source:PGSC_GENE;Acc:PGSC0003DMG400028392]
Coordinates
chr5:+:115019..115744
Molecular Weight (calculated)
28270.9 Da
IEP (calculated)
6.875
GRAVY (calculated)
-0.420
Length
241 amino acids
Sequence
(BLAST)
(BLAST)
001: MMSHPEIEWI WWMDSDAMFT DMVFEIPLSK YNGKNLIIHG YPELLNEKSW VALNTGSFLL RNCQWSLDLL DSWAPMGPKG KIRDDAGKIL SENLKGRPNF
101: EADDQSALIY MLILRNNKWM DKVFVENSYY LHGYWAGLVD RYEEMIQKYH PGFGDERWPF VTHFVGCKPC GSYGDYPVEK CLKSMERAFN FADNQVLKLY
201: GFRHRGLSSP NVKRIRNETF RPLEFVSDLD IRHSTLFRGS L
101: EADDQSALIY MLILRNNKWM DKVFVENSYY LHGYWAGLVD RYEEMIQKYH PGFGDERWPF VTHFVGCKPC GSYGDYPVEK CLKSMERAFN FADNQVLKLY
201: GFRHRGLSSP NVKRIRNETF RPLEFVSDLD IRHSTLFRGS L
001: MGKEDGFRTQ KRVSTASSAA AGVLPTTMAS GGVRRPPPRG RQIQKTFNNV KMTILCGFVT ILVLRGTIGI NFGTSDADVV NQNIIEETNR LLAEIRSDSD
101: PTDSNEPPDS DLDLNMTYTL GPKITNWDQK RKLWLTQNPD FPSFINGKAK VLLLTGSPPK PCDNPIGDHY LLKSVKNKID YCRIHGIEIV YNMAHLDKEL
201: AGYWAKLPMI RRLMLSHPEI EWIWWMDSDA LFTDMVFEIP LSRYENHNLV IHGYPDLLFD QKSWIALNTG SFLFRNCQWS LDLLDAWAPM GPKGPIREEA
301: GKILTANLKG RPAFEADDQS ALIYLLLSQK ETWMEKVFVE NQYYLHGFWE GLVDKYEEMM EKYHPGLGDE RWPFITHFVG CKPCGSYADY AVERCLKSME
401: RAFNFADNQV LKLYGFGHRG LLSPKIKRIR NETTFPLKFV DRFDIRRTTP LKIEARS
101: PTDSNEPPDS DLDLNMTYTL GPKITNWDQK RKLWLTQNPD FPSFINGKAK VLLLTGSPPK PCDNPIGDHY LLKSVKNKID YCRIHGIEIV YNMAHLDKEL
201: AGYWAKLPMI RRLMLSHPEI EWIWWMDSDA LFTDMVFEIP LSRYENHNLV IHGYPDLLFD QKSWIALNTG SFLFRNCQWS LDLLDAWAPM GPKGPIREEA
301: GKILTANLKG RPAFEADDQS ALIYLLLSQK ETWMEKVFVE NQYYLHGFWE GLVDKYEEMM EKYHPGLGDE RWPFITHFVG CKPCGSYADY AVERCLKSME
401: RAFNFADNQV LKLYGFGHRG LLSPKIKRIR NETTFPLKFV DRFDIRRTTP LKIEARS
Arabidopsis Description
XXT3Probable xyloglucan 6-xylosyltransferase 3 [Source:UniProtKB/Swiss-Prot;Acc:Q9LF80]
SUBAcon: [plastid,cytosol]
SUBAcon: [plastid,cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.