Factsheet for Zm00001d023418_P001

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 2
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
Zm00001d016687_P001	golgi
Zm00001d023398_P001	golgi
Zm00001d023399_P001	golgi
Zm00001d023417_P001	golgi
Zm00001d023418_P001	golgi
Zm00001d043041_P001	golgi

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G74380.1	Zm00001d016687_P001	AT1G74380.1	22665445
AT1G74380.1	Zm00001d023398_P001	AT1G74380.1	22665445
AT1G74380.1	Zm00001d023399_P001	AT1G74380.1	22665445
AT1G74380.1	Zm00001d023417_P001	AT1G74380.1	22665445
AT1G74380.1	Zm00001d023418_P001	AT1G74380.1	22665445
AT1G74380.1	Zm00001d043041_P001	AT1G74380.1	22665445

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d023398_P001	Maize	mitochondrion	45.78	92.01
Zm00001d043041_P001	Maize	nucleus	23.28	81.36
EES15672	Sorghum	mitochondrion	40.16	80.39
CDX85826	Canola	cytosol	12.42	57.4
CDX68187	Canola	cytosol	12.42	57.4
CDX96540	Canola	cytosol	12.22	56.76
CDX73082	Canola	cytosol	12.22	56.76
TraesCS5A01G129800.1	Wheat	mitochondrion	24.35	56.4
TraesCS5D01G137300.1	Wheat	golgi, mitochondrion	24.35	56.4
HORVU5Hr1G042000.1	Barley	golgi, mitochondrion	24.15	56.21
TraesCS5B01G128600.1	Wheat	golgi, mitochondrion	24.25	56.18
Bra008146.1-P	Field mustard	cytosol	12.12	56.05
CDY49114	Canola	peroxisome	7.57	55.71
Os12t0149300-01	Rice	golgi	24.93	55.15
PGSC0003DMT400073000	Potato	cytosol	12.42	53.11
Zm00001d023417_P001	Maize	golgi, mitochondrion	23.28	52.63
Zm00001d023399_P001	Maize	golgi, mitochondrion	23.28	52.63
Zm00001d026023_P001	Maize	endoplasmic reticulum, golgi	13.09	50.94
Zm00001d016687_P001	Maize	plasma membrane	22.89	49.37
GSMUA_Achr10P...	Banana	cytosol	20.76	49.31
KRH56886	Soybean	endoplasmic reticulum	21.24	48.99
KRH03516	Soybean	mitochondrion	21.24	48.99
VIT_17s0000g06590.t01	Wine grape	cytosol, golgi, plasma membrane, plastid	21.34	48.89
Bra015915.1-P	Field mustard	plastid	21.44	48.46
Solyc03g115740.1.1	Tomato	plastid	21.14	48.44
PGSC0003DMT400063414	Potato	plastid	21.14	48.44
AT1G74380.1	Thale cress	plastid	21.44	48.36
AT5G07720.1	Thale cress	cytosol, plastid	21.44	48.36
Bra003804.1-P	Field mustard	plastid	21.34	48.14
CDX99024	Canola	cytosol, golgi, peroxisome, plastid	21.14	48.02
CDX69995	Canola	cytosol	21.05	47.69
Bra009305.1-P	Field mustard	cytosol	21.05	47.69
CDY19235	Canola	cytosol, golgi, plasma membrane, plastid	20.76	47.35
GSMUA_Achr3P22760_001	Banana	cytosol	20.76	46.62
PGSC0003DMT400041333	Potato	plastid	20.47	46.48
Solyc05g013020.1.1	Tomato	golgi, mitochondrion, plastid	19.69	45.41
CDY26738	Canola	golgi, mitochondrion, plasma membrane, plastid	21.14	45.23
Zm00001d047647_P001	Maize	mitochondrion	16.2	45.01
Zm00001d051264_P001	Maize	mitochondrion, plastid	17.07	44.33
Zm00001d028811_P001	Maize	plasma membrane	19.2	44.3
Zm00001d047694_P001	Maize	golgi	19.2	44.2
Zm00001d025851_P001	Maize	cytosol	15.42	43.92
GSMUA_Achr11P...	Banana	cytosol	21.53	43.7
GSMUA_Achr10P...	Banana	plastid	21.05	43.06
Bra025677.1-P	Field mustard	golgi, mitochondrion, plasma membrane, plastid	20.95	42.94
Zm00001d035801_P001	Maize	mitochondrion, nucleus, plastid	7.86	41.97
AT1G18690.4	Thale cress	golgi, plastid	20.56	41.33
Zm00001d039763_P001	Maize	golgi, mitochondrion	17.85	40.98
Zm00001d028874_P001	Maize	golgi	17.17	38.9
Zm00001d051681_P001	Maize	endoplasmic reticulum, golgi, plasma membrane	14.65	34.01
Zm00001d047648_P001	Maize	endoplasmic reticulum, golgi, mitochondrion, plasma membrane	9.12	33.94
Zm00001d052625_P001	Maize	plastid	14.06	32.88
Zm00001d047654_P001	Maize	golgi, plasma membrane	6.4	31.58
Zm00001d047657_P001	Maize	mitochondrion	5.43	31.46
Zm00001d052628_P001	Maize	plasma membrane	14.55	31.32
Zm00001d052627_P001	Maize	plastid	13.19	29.69

Protein Annotations

Gene3D:1.20.930.10	Gene3D:3.90.550.10	MapMan:35.1	UniProt:A0A1D6IT87	ProteinID:AQK39285.1	GO:GO:0003674
GO:GO:0003824	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0016020
GO:GO:0016021	GO:GO:0016740	GO:GO:0016757	InterPro:Glyco_trans_34	InterPro:IPR017923	InterPro:IPR029044
InterPro:IPR035441	InterPro:Nucleotide-diphossugar_trans	PFAM:PF05637	PFAM:PF08711	PFscan:PS51319	PANTHER:PTHR31311
PANTHER:PTHR31311:SF8	SMART:SM00509	SUPFAM:SSF47676	InterPro:TFIIS/CRSP70_N_sub	InterPro:TFIIS/LEDGF_dom_sf	InterPro:TFIIS_N
UniParc:UPI00084498BD	EnsemblPlantsGene:Zm00001d023418	EnsemblPlants:Zm00001d023418_P001	EnsemblPlants:Zm00001d023418_T001	SEG:seg	:

Description

Probable xyloglucan 6-xylosyltransferase 5

Coordinates

chr10:-:5087646..5091935

Molecular Weight (calculated)

113509.0 Da

IEP (calculated)

8.497

GRAVY (calculated)

-0.741

Length

1031 amino acids

Sequence
(BLAST)

0001: MAGADTSGSD VLATVARIDR RLAREKDNDV VVELIRELQA VDMTYEVLEA TKIGHTVNAL RKSAPTALAR LLADTLYRQW KVLANEWITI STTQQQQPSP
0101: PPNTDTDSNK RSSSSPPPKA VDDKATNKPS SSPRPASPVD AEQSARPEPD HEKSAPTTIS AAPVRKNILR FRMVTVKEPG KLDRCRLMII PSEAPDPAPA
0201: SNYATQNGGD NRQQAYCTAT TSHQATNADN KGVYPSDNVP LTRTVKSPTA LPNPVASTGT CNKRKGEPST NFDEEKLAKA RVRHHEGYKA ASVAKEKRKT
0301: KVVNVKELEK PDQHRLTIIP LEASDLAPAS NDATQNGGDS RQQAYCAATA SHQTTNADNK DVYPTDDSPL TMVVKPPTAL VNHVASSGAC KKHKGKAPAD
0401: FDEERPAKTR VRLHEGYKEA SVANEKRKTK HVNIQESGKP DQRRLTIISS EAPDPAPASN DATQNGGDST QQAYCAATAS HQTTNAGNKG VCPTDDSPLT
0501: MAVKPPTASA NPVASPGACK KHKSEAPTDF DEERLAKAMQ QQADEADHQQ RQDHPLLCAF VTLLVLRGTV GVNRRLVYIA GSPDNRADPA TATGSARPVE
0601: DVERILREIR ADSDDDPDAG PNNDEAPTST SSSAATGDHY DRGAAWTTTT YRLQPRVTRW NAKRRRWLHQ NPGFPSRDAR GGPRVLLVTA SPQGPCGSPD
0701: GDRFLLRATK NRLDYCRLHG VEMVHTTARL EDPELRSPGD GWAKLALLRR LMLSHPEVEW LWWLDAGALV TDMGFELPLA RYEGAHLVVR GDSYQLFQRR
0801: AWDAASTASF LLRNCQWALD LLDAWAVMAP RGRARHDAGA LLTATLAGRP AGEADDQSAL VHLLITEKER WMDRVYLENQ YYLHGVWTAL VGKYEKAMEK
0901: HHPGYGDDRW PFVTNFAGCN PCDDGKNRSD EYPLDRCASG MERAFNFADN QVLRLYGFRH ESLASTEVRR VANRSTDPLE AKEEALAFLK KPNEPDLWSN
1001: DVRKNRKRKG KGDLDSVLAR ILRRLGWRSQ C

Best Arabidopsis Sequence Match ( AT1G18690.1 )
(BLAST)

001: MFQDGSRSSG SGRGLSTTAV SNGGWRTRGF LRGWQIQNTL FNNIKFMILC CFVTILILLG TIRVGNLGSS NADSVNQSFI KETIPILAEI PSDSHSTDLA
101: EPPKADVSPN ATYTLEPRIA EIPSDVHSTD LVELPKADIS PNATYTLGPR IAEIPSDSHL TDLLEPPKAD ISPNATYTLG PKITNWDSQR KVWLNQNPEF
201: PNIVNGKARI LLLTGSSPGP CDKPIGNYYL LKAVKNKIDY CRLHGIEIVY NMANLDEELS GYWTKLPMIR TLMLSHPEVE WIWWMDSDAL FTDILFEIPL
301: PRYENHNLVI HGYPDLLFNQ KSWVALNTGI FLLRNCQWSL DLLDAWAPMG PKGKIRDETG KILTAYLKGR PAFEADDQSA LIYLLLSQKE KWIEKVYVEN
401: QYYLHGFWEG LVDRYEEMIE KYHPGLGDER WPFVTHFVGC KPCGSYADYA VDRCFKSMER AFNFADNQVL KLYGFSHRGL LSPKIKRIRN ETVSPLESVD
501: KFDIRRMHME TKP

Arabidopsis Description

XXT4Xyloglucan 6-xylosyltransferase 4 [Source:UniProtKB/Swiss-Prot;Acc:Q9M9U0]
SUBAcon: [golgi,plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.