CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: peroxisome, golgi, plastid, cytosol

Predictor Summary:

cytosol 2
plastid 1
mitochondrion 2
golgi 1
peroxisome 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX69995	Canola	cytosol	97.14	96.92
CDX73082	Canola	cytosol	43.83	89.64
CDX96540	Canola	cytosol	43.83	89.64
AT5G07720.1	Thale cress	cytosol, plastid	89.43	88.84
CDX68187	Canola	cytosol	43.39	88.34
CDX85826	Canola	cytosol	43.39	88.34
CDY49114	Canola	peroxisome	25.33	82.14
HORVU6Hr1G040960.1	Barley	cytosol	41.19	77.92
VIT_17s0000g06590.t01	Wine grape	cytosol, golgi, plasma membrane, plastid	76.43	77.11
KRH03516	Soybean	mitochondrion	75.33	76.51
KRH56886	Soybean	endoplasmic reticulum	74.89	76.06
PGSC0003DMT400073000	Potato	cytosol	40.09	75.52
PGSC0003DMT400063414	Potato	plastid	73.35	74.0
PGSC0003DMT400041333	Potato	plastid	73.57	73.57
Solyc03g115740.1.1	Tomato	plastid	72.47	73.11
CDY19235	Canola	cytosol, golgi, plasma membrane, plastid	72.25	72.57
CDY26738	Canola	golgi, mitochondrion, plasma membrane, plastid	73.35	69.09
Solyc05g013020.1.1	Tomato	golgi, mitochondrion, plastid	66.08	67.11
GSMUA_Achr10P...	Banana	cytosol	63.88	66.82
TraesCS5B01G128600.1	Wheat	golgi, mitochondrion	64.1	65.39
HORVU5Hr1G042000.1	Barley	golgi, mitochondrion	63.66	65.24
TraesCS5D01G137300.1	Wheat	golgi, mitochondrion	63.66	64.94
TraesCS5A01G129800.1	Wheat	mitochondrion	63.66	64.94
GSMUA_Achr3P22760_001	Banana	cytosol	64.98	64.27
Zm00001d016687_P001	Maize	plasma membrane	67.62	64.23
TraesCS6D01G181200.1	Wheat	plastid	66.96	63.6
EES06903	Sorghum	plastid	67.18	63.54
TraesCS6A01G196600.1	Wheat	plastid	66.74	63.39
TraesCS6B01G221000.1	Wheat	plastid	66.74	63.39
Os02t0529600-01	Rice	golgi, peroxisome, plastid	66.52	62.92
Os12t0149300-01	Rice	golgi	61.45	59.87
GSMUA_Achr10P...	Banana	plastid	64.54	58.13
Zm00001d023399_P001	Maize	golgi, mitochondrion	57.27	57.02
Zm00001d023417_P001	Maize	golgi, mitochondrion	57.05	56.8
EES16639	Sorghum	golgi	57.93	56.56
GSMUA_Achr11P...	Banana	cytosol	62.11	55.51
CDY22055	Canola	mitochondrion	54.85	55.46
CDX90935	Canola	mitochondrion	54.19	54.79
CDX93965	Canola	mitochondrion	54.19	53.71
CDY70090	Canola	mitochondrion	41.85	53.67
CDY50378	Canola	cytosol	55.29	53.52
CDY70418	Canola	golgi, mitochondrion	54.19	53.48
CDY11442	Canola	cytosol, extracellular, mitochondrion, plastid	9.69	51.76
CDY18017	Canola	mitochondrion	37.44	50.75
CDX97271	Canola	mitochondrion	29.3	49.44
CDY65940	Canola	mitochondrion	26.87	45.86
CDX76657	Canola	mitochondrion	18.5	43.75
EES15672	Sorghum	mitochondrion	48.68	42.91
Zm00001d023398_P001	Maize	mitochondrion	47.36	41.91
Zm00001d043041_P001	Maize	nucleus	26.21	40.34
CDY11441	Canola	mitochondrion	16.08	38.62
CDY11443	Canola	cytosol	4.85	37.29
CDY29577	Canola	golgi	34.36	35.62
CDX72649	Canola	golgi	34.36	35.62
CDX76887	Canola	golgi, plastid	34.8	35.27
CDY49440	Canola	golgi	34.58	35.04
Zm00001d023418_P001	Maize	nucleus	48.02	21.14

Protein Annotations

EnsemblPlants:CDX99024	EnsemblPlantsGene:GSBRNA2T00107150001	Gene3D:3.90.550.10	GO:A0A078EDZ5	GO:GO:0003674	GO:GO:0003824
GO:GO:0005575	GO:GO:0016020	GO:GO:0016021	GO:GO:0016740	GO:GO:0016757	InterPro:Glyco_trans_34
InterPro:IPR029044	InterPro:Nucleotide-diphossugar_trans	PANTHER:PTHR31311	PANTHER:PTHR31311:SF4	PFAM:PF05637	ProteinID:CDX99024
ProteinID:CDX99024.1	SEG:seg	UniParc:UPI0004EF00D8	MapMan:21.2.1.1.2	:	:

Description

BnaC09g48110D

Coordinates

chrLK031907:+:1179451..1180946

Molecular Weight (calculated)

51795.4 Da

IEP (calculated)

8.587

GRAVY (calculated)

-0.415

Length

454 amino acids

Sequence
(BLAST)

001: MGKEDGFKTQ KRVSTAASGV LPTTIATPGG RKPPPRGKQI KKTFNNLKMT ILCGLVTILV LRGTIGVNFG KSDADAVNKN LIEETNRLLA EIRSDSDPTD
101: PNEPPDSDLD LNATYTLGPK ITNWDQQRAT WLTQNPNFPS SLAGKPRVLL LTGSPPKPCD NPIGDHYLLK SVKNKIDYCR IHGIEIVYNM AHLDKELAGY
201: WAKLPMLRRL MLSHPEIEWI WWMDSDALFT DMVFEVPLSK YENHNLVIHG YPDLLYDQKS WIALNTGSFL FRNCQWSLDL LDAWAPMGPK GQIREEAGKV
301: LTAYLKGRPA FEADDQSALI YLLLSEKDRW MGKVFVENQY YLHGFWEGLV DRYEEMMDKY HPGLGDERWP FVTHFVGCKP CGSYADYAVE RCLKSMERAY
401: NFADNQMLKL YGFGHRGLLS PKIKRIRNET ISPLKFVNRF DIRRAAPLKI EARS

Best Arabidopsis Sequence Match ( AT5G07720.1 )
(BLAST)

001: MGKEDGFRTQ KRVSTASSAA AGVLPTTMAS GGVRRPPPRG RQIQKTFNNV KMTILCGFVT ILVLRGTIGI NFGTSDADVV NQNIIEETNR LLAEIRSDSD
101: PTDSNEPPDS DLDLNMTYTL GPKITNWDQK RKLWLTQNPD FPSFINGKAK VLLLTGSPPK PCDNPIGDHY LLKSVKNKID YCRIHGIEIV YNMAHLDKEL
201: AGYWAKLPMI RRLMLSHPEI EWIWWMDSDA LFTDMVFEIP LSRYENHNLV IHGYPDLLFD QKSWIALNTG SFLFRNCQWS LDLLDAWAPM GPKGPIREEA
301: GKILTANLKG RPAFEADDQS ALIYLLLSQK ETWMEKVFVE NQYYLHGFWE GLVDKYEEMM EKYHPGLGDE RWPFITHFVG CKPCGSYADY AVERCLKSME
401: RAFNFADNQV LKLYGFGHRG LLSPKIKRIR NETTFPLKFV DRFDIRRTTP LKIEARS

Arabidopsis Description

XXT3Probable xyloglucan 6-xylosyltransferase 3 [Source:UniProtKB/Swiss-Prot;Acc:Q9LF80]
SUBAcon: [plastid,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.