Factsheet for Solyc03g115740.1.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 4
mitochondrion 2
golgi 1
cytosol 1
peroxisome 1

Predictors

GFP

MS/MS

Papers

plastid: 22908117

msms PMID: 22908117 doi

C Barsan, M Zouine, E Maza, W Bian, I Egea, M Rossignol, D Bouyssie, C Pichereaux, E Purgatto, M Bouzayen, A Latché, JC Pech

Université de Toulouse, Institut National Polytechnique-Ecole Nationale Supérieure Agronomique de Toulouse, Génomique et Biotechnologie des Fruits, Castanet-Tolosan F-31326, France.

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc03g115740.1.1	golgi
Solyc05g013020.1.1	golgi

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G74380.1	Solyc03g115740.1.1	AT1G74380.1	22665445
AT1G74380.1	Solyc05g013020.1.1	AT1G74380.1	22665445

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400063414	Potato	plastid	97.11	97.11
CDX96540	Canola	cytosol	39.11	79.28
CDX73082	Canola	cytosol	39.11	79.28
CDX68187	Canola	cytosol	39.11	78.92
CDX85826	Canola	cytosol	39.11	78.92
VIT_17s0000g06590.t01	Wine grape	cytosol, golgi, plasma membrane, plastid	78.22	78.22
Bra008146.1-P	Field mustard	cytosol	38.67	78.03
KRH56886	Soybean	endoplasmic reticulum	77.11	77.63
HORVU6Hr1G040960.1	Barley	cytosol	41.11	77.08
KRH03516	Soybean	mitochondrion	76.44	76.96
AT1G74380.1	Thale cress	plastid	76.0	74.84
Bra015915.1-P	Field mustard	plastid	75.33	74.34
Bra003804.1-P	Field mustard	plastid	75.11	73.96
AT5G07720.1	Thale cress	cytosol, plastid	74.67	73.52
CDY49114	Canola	peroxisome	22.67	72.86
CDX99024	Canola	cytosol, golgi, peroxisome, plastid	73.11	72.47
CDX69995	Canola	cytosol	72.89	72.09
Bra009305.1-P	Field mustard	cytosol	72.89	72.09
CDY19235	Canola	cytosol, golgi, plasma membrane, plastid	69.33	69.03
Solyc05g013020.1.1	Tomato	golgi, mitochondrion, plastid	66.89	67.34
GSMUA_Achr10P...	Banana	cytosol	64.0	66.36
CDY26738	Canola	golgi, mitochondrion, plasma membrane, plastid	70.89	66.18
GSMUA_Achr3P22760_001	Banana	cytosol	65.33	64.05
Zm00001d016687_P001	Maize	plasma membrane	68.0	64.02
EES06903	Sorghum	plastid	68.22	63.96
Bra025677.1-P	Field mustard	golgi, mitochondrion, plasma membrane, plastid	70.89	63.42
Os02t0529600-01	Rice	golgi, peroxisome, plastid	67.11	62.92
TraesCS6D01G181200.1	Wheat	plastid	66.67	62.76
TraesCS6A01G196600.1	Wheat	plastid	66.44	62.55
TraesCS6B01G221000.1	Wheat	plastid	66.44	62.55
HORVU5Hr1G042000.1	Barley	golgi, mitochondrion	60.44	61.4
TraesCS5A01G129800.1	Wheat	mitochondrion	60.67	61.35
TraesCS5B01G128600.1	Wheat	golgi, mitochondrion	60.67	61.35
TraesCS5D01G137300.1	Wheat	golgi, mitochondrion	60.22	60.9
AT1G18690.4	Thale cress	golgi, plastid	69.11	60.62
GSMUA_Achr10P...	Banana	plastid	67.33	60.12
Os12t0149300-01	Rice	golgi	62.22	60.09
GSMUA_Achr11P...	Banana	cytosol	64.0	56.69
Zm00001d023399_P001	Maize	golgi, mitochondrion	57.33	56.58
Zm00001d023417_P001	Maize	golgi, mitochondrion	57.11	56.36
EES16639	Sorghum	golgi	58.22	56.34
EES15672	Sorghum	mitochondrion	49.11	42.91
Zm00001d023398_P001	Maize	mitochondrion	48.22	42.3
Zm00001d043041_P001	Maize	nucleus	26.67	40.68
Solyc01g067930.2.1	Tomato	mitochondrion	18.22	39.05
Solyc03g043920.2.1	Tomato	golgi	35.56	38.65
Solyc02g092210.1.1	Tomato	golgi, mitochondrion	37.56	38.15
Zm00001d023418_P001	Maize	nucleus	48.44	21.14

Protein Annotations

MapMan:21.2.1.1.2	Gene3D:3.90.550.10	GO:GO:0003674	GO:GO:0003824	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0005768	GO:GO:0005794	GO:GO:0005802	GO:GO:0005975
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009969	GO:GO:0009987	GO:GO:0016020
GO:GO:0016021	GO:GO:0016740	GO:GO:0016757	GO:GO:0016758	InterPro:Glyco_trans_34	InterPro:IPR029044
UniProt:K4BL76	InterPro:Nucleotide-diphossugar_trans	PFAM:PF05637	PANTHER:PTHR31311	PANTHER:PTHR31311:SF4	EnsemblPlantsGene:Solyc03g115740.1
EnsemblPlants:Solyc03g115740.1.1	TMHMM:TMhelix	UniParc:UPI0002768B40	SEG:seg	:	:

Description

No Description!

Coordinates

chr3:-:65366902..65368254

Molecular Weight (calculated)

51219.1 Da

IEP (calculated)

6.243

GRAVY (calculated)

-0.394

Length

450 amino acids

Sequence
(BLAST)

001: MGPDNSFTAQ KRAGGALPTT ATPNGGAGGG RASSILPRGR QIQRTFNNIK ITILCGFVTI LVLRGTIGFG NLASSGPDVE NLNLIEETNR IIAEIRSDKD
101: PDDFFTLNAT YRLGPKITAW DEDRKLWLQK NPEFPNFVQG KPRVMLVTGS PPNPCDNPIG DHYLLKAIKN KIDYCRIHGI EIVYNLAQLE MEMAGYWAKL
201: PLIRRLMLSH PEVEWIWWMD SDALFTDMVF EIPFNKYEDH NLIIHGYPDL LFDQKSWVAV NTGSFLVRNC QWSLDLLDAW APMGPKGPVR EEAGKVLTAN
301: LKGRPAFEAD DQSALIYLLT SQKDQWMDKV FIENSYYLHG YWAGLVDRYE EMIEKYHPGL GDARWPFVTH FVGCKPCGSY GDYPAERCLK NMERAFNFAD
401: NQVLNLYGFR HEGLLSPNIK RIRNETDNPL QYVDQLDVRH AKHESTETHS

Best Arabidopsis Sequence Match ( AT5G07720.1 )
(BLAST)

001: MGKEDGFRTQ KRVSTASSAA AGVLPTTMAS GGVRRPPPRG RQIQKTFNNV KMTILCGFVT ILVLRGTIGI NFGTSDADVV NQNIIEETNR LLAEIRSDSD
101: PTDSNEPPDS DLDLNMTYTL GPKITNWDQK RKLWLTQNPD FPSFINGKAK VLLLTGSPPK PCDNPIGDHY LLKSVKNKID YCRIHGIEIV YNMAHLDKEL
201: AGYWAKLPMI RRLMLSHPEI EWIWWMDSDA LFTDMVFEIP LSRYENHNLV IHGYPDLLFD QKSWIALNTG SFLFRNCQWS LDLLDAWAPM GPKGPIREEA
301: GKILTANLKG RPAFEADDQS ALIYLLLSQK ETWMEKVFVE NQYYLHGFWE GLVDKYEEMM EKYHPGLGDE RWPFITHFVG CKPCGSYADY AVERCLKSME
401: RAFNFADNQV LKLYGFGHRG LLSPKIKRIR NETTFPLKFV DRFDIRRTTP LKIEARS

Arabidopsis Description

XXT3Probable xyloglucan 6-xylosyltransferase 3 [Source:UniProtKB/Swiss-Prot;Acc:Q9LF80]
SUBAcon: [plastid,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.