CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 3
mitochondrion 3
golgi 1
cytosol 1
peroxisome 1

Predictors

GFP

MS/MS

Papers

endoplasmic reticulum: 27224218
mitochondrion: 28499913

msms PMID: 28499913 doi

S Komatsu, X Wang, X Yin, Y Nanjo, H Ohyanagi, K Sakata

Department of Life Science and Informatics, Maebashi Institute of Technology, Maebashi 371-0816, Japan. Electronic address: ksakata@maebashi-it.ac.jp., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan. Electronic address: komatsu.setsuko.fu@u.tsukuba.ac.jp., King Abdullah University of Science and Technology (KAUST), Computational Bioscience Research Center (CBRC), Thuwal 23955-6900, Saudi Arabia.

msms PMID: 27224218 doi

X Wang, S Komatsu

Graduate School of Life and Environmental Sciences, University of Tsukuba , Tsukuba 305-8572, Japan., National Institute of Crop Science, National Agriculture and Food Research Organization , Tsukuba 305-8518, Japan.

PPI

Inferred distinct locusB in Crop

locusB	locations
KRH03516	golgi
KRH56886	golgi

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G74380.1	KRH03516	AT1G74380.1	22665445
AT1G74380.1	KRH56886	AT1G74380.1	22665445

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH56886	Soybean	endoplasmic reticulum	97.54	97.54
CDX96540	Canola	cytosol	42.06	84.68
CDX73082	Canola	cytosol	42.06	84.68
CDX85826	Canola	cytosol	42.06	84.3
CDX68187	Canola	cytosol	42.06	84.3
Bra008146.1-P	Field mustard	cytosol	41.83	83.86
VIT_17s0000g06590.t01	Wine grape	cytosol, golgi, plasma membrane, plastid	82.1	81.56
AT1G74380.1	Thale cress	plastid	80.31	78.56
HORVU6Hr1G040960.1	Barley	cytosol	42.06	78.33
Bra015915.1-P	Field mustard	plastid	79.42	77.85
PGSC0003DMT400073000	Potato	cytosol	41.83	77.59
PGSC0003DMT400063414	Potato	plastid	77.63	77.11
Solyc03g115740.1.1	Tomato	plastid	76.96	76.44
PGSC0003DMT400041333	Potato	plastid	77.63	76.43
AT5G07720.1	Thale cress	cytosol, plastid	78.08	76.37
Bra003804.1-P	Field mustard	plastid	77.85	76.15
CDX99024	Canola	cytosol, golgi, peroxisome, plastid	76.51	75.33
CDY49114	Canola	peroxisome	23.49	75.0
CDX69995	Canola	cytosol	76.29	74.95
Bra009305.1-P	Field mustard	cytosol	76.29	74.95
CDY19235	Canola	cytosol, golgi, plasma membrane, plastid	71.59	70.8
Solyc05g013020.1.1	Tomato	golgi, mitochondrion, plastid	68.23	68.23
CDY26738	Canola	golgi, mitochondrion, plasma membrane, plastid	73.38	68.05
GSMUA_Achr10P...	Banana	cytosol	65.55	67.51
Bra025677.1-P	Field mustard	golgi, mitochondrion, plasma membrane, plastid	74.05	65.81
GSMUA_Achr3P22760_001	Banana	cytosol	66.67	64.92
Zm00001d016687_P001	Maize	plasma membrane	69.13	64.64
TraesCS6A01G196600.1	Wheat	plastid	68.68	64.23
TraesCS6D01G181200.1	Wheat	plastid	68.68	64.23
Os02t0529600-01	Rice	golgi, peroxisome, plastid	68.9	64.17
TraesCS6B01G221000.1	Wheat	plastid	68.46	64.02
EES06903	Sorghum	plastid	68.46	63.75
TraesCS5A01G129800.1	Wheat	mitochondrion	63.09	63.37
AT1G18690.4	Thale cress	golgi, plastid	72.71	63.35
HORVU5Hr1G042000.1	Barley	golgi, mitochondrion	62.64	63.21
TraesCS5B01G128600.1	Wheat	golgi, mitochondrion	62.64	62.92
TraesCS5D01G137300.1	Wheat	golgi, mitochondrion	62.64	62.92
GSMUA_Achr10P...	Banana	plastid	68.46	60.71
Os12t0149300-01	Rice	golgi	62.19	59.66
Zm00001d023399_P001	Maize	golgi, mitochondrion	59.51	58.33
GSMUA_Achr11P...	Banana	cytosol	66.22	58.27
EES16639	Sorghum	golgi	60.4	58.06
Zm00001d023417_P001	Maize	golgi, mitochondrion	59.06	57.89
KRH37112	Soybean	golgi, mitochondrion	56.38	56.0
KRG96428	Soybean	mitochondrion	55.26	54.29
KRH12052	Soybean	mitochondrion	27.96	46.82
KRH68171	Soybean	golgi, mitochondrion	24.61	45.64
EES15672	Sorghum	mitochondrion	50.34	43.69
Zm00001d023398_P001	Maize	mitochondrion	49.22	42.88
Zm00001d043041_P001	Maize	nucleus	26.4	40.0
KRH58138	Soybean	golgi	36.69	38.32
KRH28334	Soybean	plastid	36.91	36.5
KRH77153	Soybean	golgi, nucleus, peroxisome, plastid	36.47	36.3
Zm00001d023418_P001	Maize	nucleus	48.99	21.24

Protein Annotations

EntrezGene:100819400	MapMan:21.2.1.1.2	Gene3D:3.90.550.10	EMBL:ACUP02010348	EnsemblPlantsGene:GLYMA_17G102400	GO:GO:0003674
GO:GO:0003824	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005768
GO:GO:0005794	GO:GO:0005802	GO:GO:0005975	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009969	GO:GO:0009987	GO:GO:0016020	GO:GO:0016021	GO:GO:0016740	GO:GO:0016757
GO:GO:0016758	InterPro:Glyco_trans_34	UniProt:I1MTW4	InterPro:IPR029044	EnsemblPlants:KRH03516	ProteinID:KRH03516
ProteinID:KRH03516.1	InterPro:Nucleotide-diphossugar_trans	PFAM:PF05637	PANTHER:PTHR31311	PANTHER:PTHR31311:SF4	TMHMM:TMhelix
UniParc:UPI000233F4E5	SEG:seg	:	:	:	:

Description

hypothetical protein

Coordinates

chr17:+:8027482..8029709

Molecular Weight (calculated)

51311.1 Da

IEP (calculated)

6.575

GRAVY (calculated)

-0.479

Length

447 amino acids

Sequence
(BLAST)

001: MGQENHHKRS TSAGLPTSTA RSRGGGNALP RGRQIQKTFN NIKITILCGF VTILVLRGTI GVNLGSSDND AVNQNLIEET NRILAEIRSD ADPSDPDDQQ
101: FFNPNDTFTL GPKIDNWDTE RKNWLHQNPE YPNVIGGKPR ILLLTGSPPK PCDNPIGDHY LLKSIKNKID YCRLHGIEIV YNLAHLDVEL AGYWAKLPMI
201: RRLMLSHPEV EWIWWMDSDA FFTDMVFELP MSKYDEYNLV LHGYPDLLFE QKSWIAVNTG SFLFRNCQWS LDLLDAWAPM GPKGPVREEA GKILTANLKG
301: RPAFEADDQS ALIYLLLSKK EKWMDKTFLE NSFYLHGYWA GLVDRYEEMI EKYHPGLGDE RWPFVTHFVG CKPCGSYGDY PVERCLSSME RAFNFADNQV
401: LKLYGFRHRG LLSPKIKRIR NETVSPLEFV DQFDIRRHST ENTESKS

Best Arabidopsis Sequence Match ( AT5G07720.1 )
(BLAST)

001: MGKEDGFRTQ KRVSTASSAA AGVLPTTMAS GGVRRPPPRG RQIQKTFNNV KMTILCGFVT ILVLRGTIGI NFGTSDADVV NQNIIEETNR LLAEIRSDSD
101: PTDSNEPPDS DLDLNMTYTL GPKITNWDQK RKLWLTQNPD FPSFINGKAK VLLLTGSPPK PCDNPIGDHY LLKSVKNKID YCRIHGIEIV YNMAHLDKEL
201: AGYWAKLPMI RRLMLSHPEI EWIWWMDSDA LFTDMVFEIP LSRYENHNLV IHGYPDLLFD QKSWIALNTG SFLFRNCQWS LDLLDAWAPM GPKGPIREEA
301: GKILTANLKG RPAFEADDQS ALIYLLLSQK ETWMEKVFVE NQYYLHGFWE GLVDKYEEMM EKYHPGLGDE RWPFITHFVG CKPCGSYADY AVERCLKSME
401: RAFNFADNQV LKLYGFGHRG LLSPKIKRIR NETTFPLKFV DRFDIRRTTP LKIEARS

Arabidopsis Description

XXT3Probable xyloglucan 6-xylosyltransferase 3 [Source:UniProtKB/Swiss-Prot;Acc:Q9LF80]
SUBAcon: [plastid,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.