Subcellular Localization
min:
: max
Winner_takes_all: plasma membrane
Predictor Summary:
Predictor Summary:
- plastid 2
- mitochondrion 2
- golgi 1
- vacuole 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
plasma membrane:
23508561
mitochondrion: 27297264 plasma membrane: 27341663 |
msms PMID:
27297264
doi
Division of Biological Sciences, ‡Department of Biochemistry, and §The Charles W Gehrke Proteomics Center, University of Missouri , Columbia, Missouri 65211, United States.
msms PMID:
27341663
doi
Bond Life Sciences Center, University of Missouri, Columbia, MO, 65211, USA., Division of Biochemistry, University of Missouri, Columbia, MO, 65211, USA., Division of Plant Sciences, University of Missouri, Columbia, MO, 65211, USA., Interdisciplinary Plant Group, University of Missouri, Columbia, MO, 65211, USA.
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Zm00001d016687_P001 | golgi |
| Zm00001d023398_P001 | golgi |
| Zm00001d023399_P001 | golgi |
| Zm00001d023417_P001 | golgi |
| Zm00001d023418_P001 | golgi |
| Zm00001d043041_P001 | golgi |
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| EES06903 | Sorghum | plastid | 97.28 | 96.88 |
| HORVU6Hr1G040960.1 | Barley | cytosol | 46.03 | 91.67 |
| Os02t0529600-01 | Rice | golgi, peroxisome, plastid | 89.96 | 89.58 |
| TraesCS6B01G221000.1 | Wheat | plastid | 87.24 | 87.24 |
| TraesCS6D01G181200.1 | Wheat | plastid | 87.03 | 87.03 |
| TraesCS6A01G196600.1 | Wheat | plastid | 86.82 | 86.82 |
| CDX68187 | Canola | cytosol | 36.82 | 78.92 |
| CDX85826 | Canola | cytosol | 36.82 | 78.92 |
| CDX73082 | Canola | cytosol | 36.61 | 78.83 |
| CDX96540 | Canola | cytosol | 36.61 | 78.83 |
| Bra008146.1-P | Field mustard | cytosol | 36.61 | 78.48 |
| CDY49114 | Canola | peroxisome | 22.59 | 77.14 |
| PGSC0003DMT400073000 | Potato | cytosol | 37.03 | 73.44 |
| GSMUA_Achr10P... | Banana | cytosol | 66.11 | 72.81 |
| KRH56886 | Soybean | endoplasmic reticulum | 64.85 | 69.35 |
| Bra015915.1-P | Field mustard | plastid | 66.11 | 69.3 |
| AT1G74380.1 | Thale cress | plastid | 66.11 | 69.15 |
| KRH03516 | Soybean | mitochondrion | 64.64 | 69.13 |
| VIT_17s0000g06590.t01 | Wine grape | cytosol, golgi, plasma membrane, plastid | 65.06 | 69.11 |
| GSMUA_Achr3P22760_001 | Banana | cytosol | 66.11 | 68.85 |
| Bra003804.1-P | Field mustard | plastid | 65.69 | 68.71 |
| PGSC0003DMT400063414 | Potato | plastid | 64.44 | 68.44 |
| Solyc03g115740.1.1 | Tomato | plastid | 64.02 | 68.0 |
| PGSC0003DMT400041333 | Potato | plastid | 64.44 | 67.84 |
| CDX99024 | Canola | cytosol, golgi, peroxisome, plastid | 64.23 | 67.62 |
| AT5G07720.1 | Thale cress | cytosol, plastid | 64.23 | 67.18 |
| CDX69995 | Canola | cytosol | 63.81 | 67.03 |
| Bra009305.1-P | Field mustard | cytosol | 63.81 | 67.03 |
| Zm00001d023399_P001 | Maize | golgi, mitochondrion | 61.72 | 64.69 |
| Zm00001d023417_P001 | Maize | golgi, mitochondrion | 61.51 | 64.47 |
| CDY19235 | Canola | cytosol, golgi, plasma membrane, plastid | 59.83 | 63.27 |
| GSMUA_Achr10P... | Banana | plastid | 66.53 | 63.1 |
| GSMUA_Achr11P... | Banana | cytosol | 66.95 | 62.99 |
| Zm00001d026023_P001 | Maize | endoplasmic reticulum, golgi | 33.89 | 61.13 |
| Solyc05g013020.1.1 | Tomato | golgi, mitochondrion, plastid | 57.11 | 61.07 |
| CDY26738 | Canola | golgi, mitochondrion, plasma membrane, plastid | 61.3 | 60.79 |
| Bra025677.1-P | Field mustard | golgi, mitochondrion, plasma membrane, plastid | 61.09 | 58.05 |
| AT1G18690.4 | Thale cress | golgi, plastid | 60.46 | 56.34 |
| Zm00001d025851_P001 | Maize | cytosol | 41.21 | 54.42 |
| Zm00001d051264_P001 | Maize | mitochondrion, plastid | 44.35 | 53.4 |
| Zm00001d028811_P001 | Maize | plasma membrane | 49.16 | 52.57 |
| Zm00001d047694_P001 | Maize | golgi | 49.16 | 52.46 |
| Zm00001d047647_P001 | Maize | mitochondrion | 38.08 | 49.06 |
| Zm00001d035801_P001 | Maize | mitochondrion, nucleus, plastid | 19.25 | 47.67 |
| Zm00001d023398_P001 | Maize | mitochondrion | 50.0 | 46.59 |
| Zm00001d039763_P001 | Maize | golgi, mitochondrion | 43.1 | 45.88 |
| Zm00001d043041_P001 | Maize | nucleus | 27.41 | 44.41 |
| Zm00001d028874_P001 | Maize | golgi | 39.75 | 41.76 |
| Zm00001d052625_P001 | Maize | plastid | 32.85 | 35.6 |
| Zm00001d051681_P001 | Maize | endoplasmic reticulum, golgi, plasma membrane | 32.85 | 35.36 |
| Zm00001d047648_P001 | Maize | endoplasmic reticulum, golgi, mitochondrion, plasma membrane | 20.29 | 35.02 |
| Zm00001d047657_P001 | Maize | mitochondrion | 12.97 | 34.83 |
| Zm00001d052628_P001 | Maize | plasma membrane | 33.89 | 33.82 |
| Zm00001d047654_P001 | Maize | golgi, plasma membrane | 14.64 | 33.49 |
| Zm00001d052627_P001 | Maize | plastid | 31.8 | 33.19 |
| Zm00001d023418_P001 | Maize | nucleus | 49.37 | 22.89 |
Protein Annotations
| EnsemblPlants:Zm00001d016687_P001 | EnsemblPlants:Zm00001d016687_T001 | EnsemblPlantsGene:Zm00001d016687 | Gene3D:3.90.550.10 | GO:GO:0003674 | GO:GO:0003824 |
| GO:GO:0005575 | GO:GO:0016020 | GO:GO:0016021 | GO:GO:0016740 | GO:GO:0016757 | InterPro:Glyco_trans_34 |
| InterPro:IPR029044 | InterPro:Nucleotide-diphossugar_trans | PANTHER:PTHR31311 | PANTHER:PTHR31311:SF4 | PFAM:PF05637 | ProteinID:AQK71478.1 |
| SEG:seg | TMHMM:TMhelix | UniParc:UPI000220E1D3 | UniProt:A0A1D6H9U5 | MapMan:21.2.1.1.2 | : |
Description
Putative glycosyltransferase
Coordinates
chr5:-:172501486..172502922
Molecular Weight (calculated)
53120.4 Da
IEP (calculated)
7.091
GRAVY (calculated)
-0.351
Length
478 amino acids
Sequence
(BLAST)
(BLAST)
001: MGQEGMGYNS KGGGGGGGGG GGLPMTAPRP RGASPLHHSR SRKIHRTFNN LKITVLCGLV TILVLRGTIG LNLSLPSQPS DAEALADAKA VEDIDRILRE
101: IRSDSGPDPD DEGDFGAASG FNATALSATE AAAAYAAAVG KYALGPKISD WDAQRRRWLA QNPGFPATLA GGKPRIMLVT GSQPGPCDNP LGDHYLLKTT
201: KNKIDYCRLH GIEIVHNLAH LDNELAGYWA KLPLLRRLML SHPEVEWIWW MDSDALFTDM SFELPLSRYD GHNLIIHGYQ DLLFEKHSWI ALNTGSFLFR
301: NCQWSLDLLD AWAPMGPKGF IRDQAGKVLT ANLKGRPAFE ADDQSALIYL LLSQKDKWMD KVFIENSYYL HGFWAGLVDK YEEMMENHHP GLGDERWPFV
401: THFVGCKPCG SYGDYPVERC LRSMERAFNF ADNQVLRLYG FSHKGLESPK IKRFRDQTTR PINDVENLDM KAKISTIS
101: IRSDSGPDPD DEGDFGAASG FNATALSATE AAAAYAAAVG KYALGPKISD WDAQRRRWLA QNPGFPATLA GGKPRIMLVT GSQPGPCDNP LGDHYLLKTT
201: KNKIDYCRLH GIEIVHNLAH LDNELAGYWA KLPLLRRLML SHPEVEWIWW MDSDALFTDM SFELPLSRYD GHNLIIHGYQ DLLFEKHSWI ALNTGSFLFR
301: NCQWSLDLLD AWAPMGPKGF IRDQAGKVLT ANLKGRPAFE ADDQSALIYL LLSQKDKWMD KVFIENSYYL HGFWAGLVDK YEEMMENHHP GLGDERWPFV
401: THFVGCKPCG SYGDYPVERC LRSMERAFNF ADNQVLRLYG FSHKGLESPK IKRFRDQTTR PINDVENLDM KAKISTIS
001: MGKEDGFRTQ KRVSTASSAA AGVLPTTMAS GGVRRPPPRG RQIQKTFNNV KMTILCGFVT ILVLRGTIGI NFGTSDADVV NQNIIEETNR LLAEIRSDSD
101: PTDSNEPPDS DLDLNMTYTL GPKITNWDQK RKLWLTQNPD FPSFINGKAK VLLLTGSPPK PCDNPIGDHY LLKSVKNKID YCRIHGIEIV YNMAHLDKEL
201: AGYWAKLPMI RRLMLSHPEI EWIWWMDSDA LFTDMVFEIP LSRYENHNLV IHGYPDLLFD QKSWIALNTG SFLFRNCQWS LDLLDAWAPM GPKGPIREEA
301: GKILTANLKG RPAFEADDQS ALIYLLLSQK ETWMEKVFVE NQYYLHGFWE GLVDKYEEMM EKYHPGLGDE RWPFITHFVG CKPCGSYADY AVERCLKSME
401: RAFNFADNQV LKLYGFGHRG LLSPKIKRIR NETTFPLKFV DRFDIRRTTP LKIEARS
101: PTDSNEPPDS DLDLNMTYTL GPKITNWDQK RKLWLTQNPD FPSFINGKAK VLLLTGSPPK PCDNPIGDHY LLKSVKNKID YCRIHGIEIV YNMAHLDKEL
201: AGYWAKLPMI RRLMLSHPEI EWIWWMDSDA LFTDMVFEIP LSRYENHNLV IHGYPDLLFD QKSWIALNTG SFLFRNCQWS LDLLDAWAPM GPKGPIREEA
301: GKILTANLKG RPAFEADDQS ALIYLLLSQK ETWMEKVFVE NQYYLHGFWE GLVDKYEEMM EKYHPGLGDE RWPFITHFVG CKPCGSYADY AVERCLKSME
401: RAFNFADNQV LKLYGFGHRG LLSPKIKRIR NETTFPLKFV DRFDIRRTTP LKIEARS
Arabidopsis Description
XXT3Probable xyloglucan 6-xylosyltransferase 3 [Source:UniProtKB/Swiss-Prot;Acc:Q9LF80]
SUBAcon: [plastid,cytosol]
SUBAcon: [plastid,cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.