Factsheet for Zm00001d023399_P001

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, golgi

Predictor Summary:

plastid 1
mitochondrion 4
golgi 2

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Zm00001d016687_P001	golgi
Zm00001d023398_P001	golgi
Zm00001d023399_P001	golgi
Zm00001d023417_P001	golgi
Zm00001d023418_P001	golgi
Zm00001d043041_P001	golgi

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G74380.1	Zm00001d016687_P001	AT1G74380.1	22665445
AT1G74380.1	Zm00001d023398_P001	AT1G74380.1	22665445
AT1G74380.1	Zm00001d023399_P001	AT1G74380.1	22665445
AT1G74380.1	Zm00001d023417_P001	AT1G74380.1	22665445
AT1G74380.1	Zm00001d023418_P001	AT1G74380.1	22665445
AT1G74380.1	Zm00001d043041_P001	AT1G74380.1	22665445

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d023417_P001	Maize	golgi, mitochondrion	99.12	99.12
EES16639	Sorghum	golgi	92.11	90.32
TraesCS5A01G129800.1	Wheat	mitochondrion	67.32	68.99
HORVU5Hr1G042000.1	Barley	golgi, mitochondrion	66.67	68.62
TraesCS5B01G128600.1	Wheat	golgi, mitochondrion	66.67	68.31
TraesCS5D01G137300.1	Wheat	golgi, mitochondrion	66.67	68.31
CDX96540	Canola	cytosol	32.02	65.77
CDX73082	Canola	cytosol	32.02	65.77
CDY49114	Canola	peroxisome	20.18	65.71
Os12t0149300-01	Rice	golgi	66.89	65.45
CDX68187	Canola	cytosol	31.8	65.02
CDX85826	Canola	cytosol	31.8	65.02
Bra008146.1-P	Field mustard	cytosol	31.58	64.57
Zm00001d016687_P001	Maize	plasma membrane	64.69	61.72
PGSC0003DMT400073000	Potato	cytosol	32.24	61.0
GSMUA_Achr10P...	Banana	cytosol	56.8	59.68
KRH03516	Soybean	mitochondrion	58.33	59.51
KRH56886	Soybean	endoplasmic reticulum	58.11	59.28
Bra015915.1-P	Field mustard	plastid	58.77	58.77
PGSC0003DMT400063414	Potato	plastid	57.68	58.44
AT1G74380.1	Thale cress	plastid	58.55	58.42
VIT_17s0000g06590.t01	Wine grape	cytosol, golgi, plasma membrane, plastid	57.46	58.22
Bra003804.1-P	Field mustard	plastid	58.11	57.99
AT5G07720.1	Thale cress	cytosol, plastid	57.89	57.77
GSMUA_Achr3P22760_001	Banana	cytosol	57.89	57.52
Solyc03g115740.1.1	Tomato	plastid	56.58	57.33
CDX99024	Canola	cytosol, golgi, peroxisome, plastid	57.02	57.27
CDX69995	Canola	cytosol	56.8	56.92
Bra009305.1-P	Field mustard	cytosol	56.58	56.7
PGSC0003DMT400041333	Potato	plastid	56.36	56.61
CDY19235	Canola	cytosol, golgi, plasma membrane, plastid	55.92	56.42
Zm00001d026023_P001	Maize	endoplasmic reticulum, golgi	32.46	55.85
CDY26738	Canola	golgi, mitochondrion, plasma membrane, plastid	57.02	53.94
GSMUA_Achr10P...	Banana	plastid	58.11	52.58
Solyc05g013020.1.1	Tomato	golgi, mitochondrion, plastid	51.32	52.35
GSMUA_Achr11P...	Banana	cytosol	57.89	51.97
Zm00001d025851_P001	Maize	cytosol	41.23	51.93
Zm00001d051264_P001	Maize	mitochondrion, plastid	45.18	51.89
Bra025677.1-P	Field mustard	golgi, mitochondrion, plasma membrane, plastid	56.36	51.09
Zm00001d047647_P001	Maize	mitochondrion	41.23	50.67
Zm00001d028811_P001	Maize	plasma membrane	49.12	50.11
Zm00001d047694_P001	Maize	golgi	49.12	50.0
AT1G18690.4	Thale cress	golgi, plastid	56.14	49.9
Zm00001d035801_P001	Maize	mitochondrion, nucleus, plastid	21.05	49.74
Zm00001d039763_P001	Maize	golgi, mitochondrion	47.15	47.88
Zm00001d023398_P001	Maize	mitochondrion	53.51	47.56
Zm00001d043041_P001	Maize	nucleus	30.26	46.78
Zm00001d028874_P001	Maize	golgi	41.01	41.1
Zm00001d051681_P001	Maize	endoplasmic reticulum, golgi, plasma membrane	35.96	36.94
Zm00001d047648_P001	Maize	endoplasmic reticulum, golgi, mitochondrion, plasma membrane	21.93	36.1
Zm00001d052625_P001	Maize	plastid	34.43	35.6
Zm00001d047657_P001	Maize	mitochondrion	13.82	35.39
Zm00001d052627_P001	Maize	plastid	35.53	35.37
Zm00001d047654_P001	Maize	golgi, plasma membrane	16.01	34.93
Zm00001d052628_P001	Maize	plasma membrane	35.53	33.82
Zm00001d023418_P001	Maize	nucleus	52.63	23.28

Protein Annotations

EntrezGene:103640748	MapMan:21.2.1.1.2	Gene3D:3.90.550.10	ProteinID:AQK39269.1	GO:GO:0003674	GO:GO:0003824
GO:GO:0005575	GO:GO:0016020	GO:GO:0016021	GO:GO:0016740	GO:GO:0016757	InterPro:Glyco_trans_34
InterPro:IPR029044	UniProt:K7UBP6	InterPro:Nucleotide-diphossugar_trans	PFAM:PF05637	PANTHER:PTHR31311	PANTHER:PTHR31311:SF8
TMHMM:TMhelix	UniParc:UPI0002216EAF	EnsemblPlantsGene:Zm00001d023399	EnsemblPlants:Zm00001d023399_P001	EnsemblPlants:Zm00001d023399_T001	SEG:seg

Description

Probable xyloglucan 6-xylosyltransferase 5

Coordinates

chr10:-:4727487..4728857

Molecular Weight (calculated)

51183.2 Da

IEP (calculated)

7.396

GRAVY (calculated)

-0.277

Length

456 amino acids

Sequence
(BLAST)

001: MGVAAGGGAR LRASSAKKQR QRTLNNIKIT LLCGFITVLV LRGTAGFNLL VSSGDLDGAA ADAKVVEDVE RILAEIRSDS EADDVVVVVE GGSSSSSSPR
101: NATAASFGNF SASATLVKVR EYSLGPPVRG WDAQRREWMA QHPEFPRLHP RGRPRVLLVT GSPPGPCDNP AGDHYLLKAT KNKIDYCRLH GIDVVHNMAH
201: LDPELTGYWS KLPLVRRLML AHPEVEWIWW VDSDAIFTDM AFELPLSRYD GRNLVIHGYP DLLFEKRSWI SLNAGIFLLR NCQWSLDLLD AWVPMGPRGP
301: SRVEAGKLLT ASLTGRPPFD ADDQSALIHL LLVQKERWMD KVHVETEFYL HGFWTGLVDR YEQMMEDNHP GLGDDRWPFI THFVGCKTCG RYEDYPLDRC
401: IRGMERAFNF ADNQVLRLYG FRHRSLTTAK VRRVTDPTTN PLEAKEAALN MDAKFT

Best Arabidopsis Sequence Match ( AT5G07720.1 )
(BLAST)

001: MGKEDGFRTQ KRVSTASSAA AGVLPTTMAS GGVRRPPPRG RQIQKTFNNV KMTILCGFVT ILVLRGTIGI NFGTSDADVV NQNIIEETNR LLAEIRSDSD
101: PTDSNEPPDS DLDLNMTYTL GPKITNWDQK RKLWLTQNPD FPSFINGKAK VLLLTGSPPK PCDNPIGDHY LLKSVKNKID YCRIHGIEIV YNMAHLDKEL
201: AGYWAKLPMI RRLMLSHPEI EWIWWMDSDA LFTDMVFEIP LSRYENHNLV IHGYPDLLFD QKSWIALNTG SFLFRNCQWS LDLLDAWAPM GPKGPIREEA
301: GKILTANLKG RPAFEADDQS ALIYLLLSQK ETWMEKVFVE NQYYLHGFWE GLVDKYEEMM EKYHPGLGDE RWPFITHFVG CKPCGSYADY AVERCLKSME
401: RAFNFADNQV LKLYGFGHRG LLSPKIKRIR NETTFPLKFV DRFDIRRTTP LKIEARS

Arabidopsis Description

XXT3Probable xyloglucan 6-xylosyltransferase 3 [Source:UniProtKB/Swiss-Prot;Acc:Q9LF80]
SUBAcon: [plastid,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.