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Canola
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Canola
Subcellular Localization
min:
: max

 
Winner_takes_all: cytosol

Predictor Summary:
  • plastid 1
  • cytosol 3
  • mitochondrion 2
Predictors GFP MS/MS Papers
Winner Takes All:cytosol
Any Predictor:cytosol, mitochondrion, plastid
BaCelLo:plastid
MultiLoc:cytosol
PProwler:mitochondrion
TargetP:mitochondrion
WoLF PSORT:cytosol
YLoc:cytosol
PPI

Inferred distinct locusB in Crop

locusBlocations
CDX68187 golgi
CDX73082 golgi
CDX85826 golgi
CDX96540 golgi
CDY49114 golgi

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT1G74380.1 CDX68187 AT1G74380.1 22665445
AT1G74380.1 CDX73082 AT1G74380.1 22665445
AT1G74380.1 CDX85826 AT1G74380.1 22665445
AT1G74380.1 CDX96540 AT1G74380.1 22665445
AT1G74380.1 CDY49114 AT1G74380.1 22665445
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
CDX96540 Canola cytosol 100.0 100.0
CDX68187 Canola cytosol 97.3 96.86
CDX85826 Canola cytosol 97.3 96.86
CDY49114 Canola peroxisome 54.5 86.43
HORVU6Hr1G040960.1 Barley cytosol 70.27 65.0
PGSC0003DMT400073000 Potato cytosol 69.82 64.32
CDY11442 Canola cytosol, extracellular, mitochondrion, plastid 18.92 49.41
AT1G74380.1 Thale cress plastid 96.85 47.05
CDX99024 Canola cytosol, golgi, peroxisome, plastid 89.64 43.83
CDX69995 Canola cytosol 89.64 43.74
VIT_17s0000g06590.t01 Wine grape cytosol, golgi, plasma membrane, plastid 86.94 42.89
CDY19235 Canola cytosol, golgi, plasma membrane, plastid 86.94 42.7
CDX76657 Canola mitochondrion 36.49 42.19
KRH56886 Soybean endoplasmic reticulum 84.68 42.06
KRH03516 Soybean mitochondrion 84.68 42.06
CDY26738 Canola golgi, mitochondrion, plasma membrane, plastid 90.09 41.49
CDY11443 Canola cytosol 10.81 40.68
PGSC0003DMT400041333 Potato plastid 81.53 39.87
GSMUA_Achr10P... Banana cytosol 77.93 39.86
CDY18017 Canola mitochondrion 59.46 39.4
PGSC0003DMT400063414 Potato plastid 79.73 39.33
Solyc03g115740.1.1 Tomato plastid 79.28 39.11
Solyc05g013020.1.1 Tomato golgi, mitochondrion, plastid 78.38 38.93
GSMUA_Achr3P22760_001 Banana cytosol 78.38 37.91
Zm00001d016687_P001 Maize plasma membrane 78.83 36.61
EES06903 Sorghum plastid 78.83 36.46
TraesCS5B01G128600.1 Wheat golgi, mitochondrion 72.97 36.4
Os02t0529600-01 Rice golgi, peroxisome, plastid 78.38 36.25
TraesCS5A01G129800.1 Wheat mitochondrion 72.52 36.18
TraesCS5D01G137300.1 Wheat golgi, mitochondrion 72.52 36.18
HORVU5Hr1G042000.1 Barley golgi, mitochondrion 72.07 36.12
TraesCS6A01G196600.1 Wheat plastid 77.48 35.98
TraesCS6D01G181200.1 Wheat plastid 77.48 35.98
TraesCS6B01G221000.1 Wheat plastid 77.03 35.77
Os12t0149300-01 Rice golgi 73.42 34.98
GSMUA_Achr10P... Banana plastid 78.83 34.72
GSMUA_Achr11P... Banana cytosol 77.93 34.06
CDY22055 Canola mitochondrion 68.47 33.85
CDX90935 Canola mitochondrion 68.02 33.63
EES16639 Sorghum golgi 67.12 32.04
Zm00001d023399_P001 Maize golgi, mitochondrion 65.77 32.02
CDY50378 Canola cytosol 67.57 31.98
Zm00001d023417_P001 Maize golgi, mitochondrion 65.32 31.8
CDY65940 Canola mitochondrion 36.94 30.83
CDX97271 Canola mitochondrion 36.94 30.48
CDY70418 Canola golgi, mitochondrion 63.06 30.43
CDX93965 Canola mitochondrion 62.61 30.35
CDY70090 Canola mitochondrion 40.09 25.14
EES15672 Sorghum mitochondrion 57.66 24.85
Zm00001d023398_P001 Maize mitochondrion 56.31 24.37
CDY29577 Canola golgi 37.84 19.18
Zm00001d043041_P001 Maize nucleus 25.23 18.98
CDX72649 Canola golgi 37.39 18.95
CDY49440 Canola golgi 37.39 18.53
CDX76887 Canola golgi, plastid 37.39 18.53
Zm00001d023418_P001 Maize nucleus 56.76 12.22
CDY11441 Canola mitochondrion 0.9 1.06
Protein Annotations
EnsemblPlants:CDX73082EnsemblPlantsGene:GSBRNA2T00103535001GO:A0A078C8C4GO:GO:0003674GO:GO:0003824GO:GO:0005575
GO:GO:0016020GO:GO:0016021GO:GO:0016740GO:GO:0016757InterPro:Glyco_trans_34PANTHER:PTHR31311
PANTHER:PTHR31311:SF4PFAM:PF05637ProteinID:CDX73082ProteinID:CDX73082.1UniParc:UPI0004EE437BMapMan:35.1
Description
BnaC06g35300D
Coordinates
chrLK031797:+:1975949..1976881
Molecular Weight (calculated)
25952.4 Da
IEP (calculated)
7.968
GRAVY (calculated)
-0.386
Length
222 amino acids
Sequence
(BLAST)
001: MAHLDKELAG YWAKLPMIRR LMLSHPEKSW IALNTGSFLL RNCQWSLDLL DAWAPMGPKG PIRDEAGKVL TAYLKGRPAF EADDQSALIY LLLSQKDTWM
101: EKVFVENQYY LHGFWEGLVD RYEEMMEKYH PGLGDERWPF VTHFVGCKPC GSYADYAVER CLKSMERAFN FADNQVLKLY GFGHRGLLSP KIKRIRNETV
201: APLEFVDKFD IRRTEVEFKP RY
Best Arabidopsis Sequence Match ( AT1G18690.1 )
(BLAST)
001: MFQDGSRSSG SGRGLSTTAV SNGGWRTRGF LRGWQIQNTL FNNIKFMILC CFVTILILLG TIRVGNLGSS NADSVNQSFI KETIPILAEI PSDSHSTDLA
101: EPPKADVSPN ATYTLEPRIA EIPSDVHSTD LVELPKADIS PNATYTLGPR IAEIPSDSHL TDLLEPPKAD ISPNATYTLG PKITNWDSQR KVWLNQNPEF
201: PNIVNGKARI LLLTGSSPGP CDKPIGNYYL LKAVKNKIDY CRLHGIEIVY NMANLDEELS GYWTKLPMIR TLMLSHPEVE WIWWMDSDAL FTDILFEIPL
301: PRYENHNLVI HGYPDLLFNQ KSWVALNTGI FLLRNCQWSL DLLDAWAPMG PKGKIRDETG KILTAYLKGR PAFEADDQSA LIYLLLSQKE KWIEKVYVEN
401: QYYLHGFWEG LVDRYEEMIE KYHPGLGDER WPFVTHFVGC KPCGSYADYA VDRCFKSMER AFNFADNQVL KLYGFSHRGL LSPKIKRIRN ETVSPLESVD
501: KFDIRRMHME TKP
Arabidopsis Description
XXT4Xyloglucan 6-xylosyltransferase 4 [Source:UniProtKB/Swiss-Prot;Acc:Q9M9U0]
SUBAcon: [golgi,plastid]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.