CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 1
mitochondrion 5
golgi 1
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX68187	golgi
CDX73082	golgi
CDX85826	golgi
CDX90935	golgi
CDX96540	golgi
CDX97271	golgi
CDY18017	golgi
CDY22055	golgi
CDY49114	golgi
CDY50378	golgi
CDY65940	golgi
CDY70090	golgi

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G02500.1	CDX68187	AT1G74380.1	22665445
AT4G02500.1	CDX73082	AT1G74380.1	22665445
AT4G02500.1	CDX85826	AT1G74380.1	22665445
AT4G02500.1	CDX96540	AT1G74380.1	22665445
AT4G02500.1	CDY49114	AT1G74380.1	22665445
AT4G02500.1	CDX90935	AT4G02500.1	22665445
AT4G02500.1	CDX97271	AT4G02500.1	22665445
AT4G02500.1	CDY18017	AT4G02500.1	22665445
AT4G02500.1	CDY22055	AT4G02500.1	22665445
AT4G02500.1	CDY50378	AT4G02500.1	22665445
AT4G02500.1	CDY65940	AT4G02500.1	22665445
AT4G02500.1	CDY70090	AT4G02500.1	22665445

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY65940	Canola	mitochondrion	90.71	91.73
CDY70090	Canola	mitochondrion	87.73	66.67
CDY18017	Canola	mitochondrion	80.67	64.78
Bra018545.1-P	Field mustard	mitochondrion	97.03	56.49
CDY22055	Canola	mitochondrion	91.45	54.79
CDY11442	Canola	cytosol, extracellular, mitochondrion, plastid	16.73	52.94
CDX90935	Canola	mitochondrion	87.73	52.56
AT4G02500.1	Thale cress	mitochondrion	89.22	52.06
CDY49114	Canola	peroxisome	26.39	50.71
CDY50378	Canola	cytosol	86.25	49.47
VIT_07s0005g00150.t01	Wine grape	mitochondrion	79.18	47.12
KRH37112	Soybean	golgi, mitochondrion	75.09	44.89
Zm00001d026023_P001	Maize	endoplasmic reticulum, golgi	43.87	44.53
CDY70418	Canola	golgi, mitochondrion	75.46	44.13
CDX93965	Canola	mitochondrion	75.09	44.1
CDY11441	Canola	mitochondrion	30.86	43.92
KRG96428	Soybean	mitochondrion	73.98	43.74
KRH12052	Soybean	mitochondrion	42.01	42.32
VIT_05s0020g01530.t01	Wine grape	mitochondrion	73.23	42.27
PGSC0003DMT400058812	Potato	mitochondrion	72.12	41.81
GSMUA_Achr1P24760_001	Banana	mitochondrion	65.8	40.97
Zm00001d035801_P001	Maize	mitochondrion, nucleus, plastid	29.37	40.93
EER92398	Sorghum	golgi	67.66	40.81
Zm00001d028811_P001	Maize	plasma membrane	67.66	40.72
Zm00001d047694_P001	Maize	golgi	67.66	40.62
TraesCS4D01G189500.1	Wheat	golgi, mitochondrion	66.17	39.47
HORVU4Hr1G054910.1	Barley	golgi, mitochondrion	66.17	39.38
TraesCS4A01G116100.2	Wheat	golgi, mitochondrion	66.17	39.38
Os03t0300000-01	Rice	cytosol	50.93	39.37
TraesCS4B01G188100.1	Wheat	golgi, mitochondrion	65.8	39.25
TraesCS1B01G115300.1	Wheat	golgi, mitochondrion	66.17	38.12
GSMUA_Achr8P22410_001	Banana	golgi, mitochondrion	60.59	38.0
CDX68187	Canola	cytosol	30.86	37.22
CDX85826	Canola	cytosol	30.86	37.22
CDX73082	Canola	cytosol	30.48	36.94
CDX96540	Canola	cytosol	30.48	36.94
Zm00001d051264_P001	Maize	mitochondrion, plastid	53.53	36.27
Zm00001d025851_P001	Maize	cytosol	48.7	36.19
CDX76657	Canola	mitochondrion	24.16	33.85
Solyc01g067930.2.1	Tomato	mitochondrion	26.02	33.33
KRH68171	Soybean	golgi, mitochondrion	29.74	33.2
CDX69995	Canola	cytosol	49.81	29.45
CDX99024	Canola	cytosol, golgi, peroxisome, plastid	49.44	29.3
CDY19235	Canola	cytosol, golgi, plasma membrane, plastid	44.98	26.77
CDY26738	Canola	golgi, mitochondrion, plasma membrane, plastid	46.47	25.93
CDY49440	Canola	golgi	28.62	17.19
CDX76887	Canola	golgi, plastid	27.88	16.74
CDY29577	Canola	golgi	26.77	16.44
CDX72649	Canola	golgi	26.77	16.44
CDY11443	Canola	cytosol	0.0	0.0

Protein Annotations

EnsemblPlants:CDX97271	EnsemblPlantsGene:GSBRNA2T00104304001	GO:A0A078E7T5	GO:GO:0003674	GO:GO:0003824	GO:GO:0005575
GO:GO:0016020	GO:GO:0016021	GO:GO:0016740	GO:GO:0016757	InterPro:Glyco_trans_34	PANTHER:PTHR31311
PANTHER:PTHR31311:SF6	PFAM:PF05637	ProteinID:CDX97271	ProteinID:CDX97271.1	SEG:seg	TMHMM:TMhelix
UniParc:UPI0004EDB528	MapMan:35.1	:	:	:	:

Description

BnaA02g20620D

Coordinates

chrLK031898:+:461803..463322

Molecular Weight (calculated)

30710.6 Da

IEP (calculated)

5.977

GRAVY (calculated)

-0.476

Length

269 amino acids

Sequence
(BLAST)

001: MMERCLGANR CRRIQRALRH LKVTVLCLVL TIVVLRGTIG AGKFGTPEQD LDEIRQHIYT SRKRAEPHRV LEEIQTGGDS SSSGGGGGGS NNYETFDINK
101: IFPYTLGPKI SDWDEQRSDC DAMFTDMAFE LPWERYKDYN LVMHGWNEMV YDEKNWIGLN TGSFLLRNNQ WALDLLDTWA PMGPKGKIRE EAGKVLTREL
201: KGRPVFEADD QSAMVYLLAT QRATWGNKVY LENGYYLHGY WGILVDKYEE MIENYHPGLV WGLPGGTVS

Best Arabidopsis Sequence Match ( AT1G74380.1 )
(BLAST)

001: MGQDGSPAHK RPSGSGGGLP TTTLTNGGGR GGRGGLLPRG RQMQKTFNNI KITILCGFVT ILVLRGTIGV GNLGSSSADA VNQNIIEETN RILAEIRSDS
101: DPTDLDEPQE GDMNPNATYV LGPKITDWDS QRKVWLNQNP EFPSTVNGKA RILLLTGSPP KPCDNPIGDH YLLKSVKNKI DYCRLHGIEI VYNMAHLDKE
201: LAGYWAKLPM IRRLMLSHPE VEWIWWMDSD ALFTDILFQI PLARYQKHNL VIHGYPDLLF DQKSWIALNT GSFLLRNCQW SLDLLDAWAP MGPKGPIRDE
301: AGKVLTAYLK GRPAFEADDQ SALIYLLLSQ KDTWMEKVFV ENQYYLHGFW EGLVDRYEEM IEKYHPGLGD ERWPFVTHFV GCKPCGSYAD YAVERCLKSM
401: ERAFNFADNQ VLKLYGFSHR GLLSPKIKRI RNETVSPLEF VDKFDIRRTP VETKPQN

Arabidopsis Description

XXT5Probable xyloglucan 6-xylosyltransferase 5 [Source:UniProtKB/Swiss-Prot;Acc:Q9CA75]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.