CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 1
mitochondrion 5
golgi 1
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX68187	golgi
CDX73082	golgi
CDX85826	golgi
CDX90935	golgi
CDX96540	golgi
CDX97271	golgi
CDY18017	golgi
CDY22055	golgi
CDY49114	golgi
CDY50378	golgi
CDY65940	golgi
CDY70090	golgi

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G02500.1	CDX68187	AT1G74380.1	22665445
AT4G02500.1	CDX73082	AT1G74380.1	22665445
AT4G02500.1	CDX85826	AT1G74380.1	22665445
AT4G02500.1	CDX96540	AT1G74380.1	22665445
AT4G02500.1	CDY49114	AT1G74380.1	22665445
AT4G02500.1	CDX90935	AT4G02500.1	22665445
AT4G02500.1	CDX97271	AT4G02500.1	22665445
AT4G02500.1	CDY18017	AT4G02500.1	22665445
AT4G02500.1	CDY22055	AT4G02500.1	22665445
AT4G02500.1	CDY50378	AT4G02500.1	22665445
AT4G02500.1	CDY65940	AT4G02500.1	22665445
AT4G02500.1	CDY70090	AT4G02500.1	22665445

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra000877.1-P	Field mustard	mitochondrion	98.66	95.68
CDY18017	Canola	mitochondrion	70.16	94.03
CDY22055	Canola	mitochondrion	93.32	93.32
AT4G02500.1	Thale cress	mitochondrion	95.55	93.06
CDY70090	Canola	mitochondrion	72.16	91.53
CDX97271	Canola	mitochondrion	52.56	87.73
CDY50378	Canola	cytosol	91.54	87.63
CDY65940	Canola	mitochondrion	51.0	86.09
Zm00001d026023_P001	Maize	endoplasmic reticulum, golgi	50.78	86.04
Os03t0300000-01	Rice	cytosol	65.48	84.48
VIT_07s0005g00150.t01	Wine grape	mitochondrion	84.63	84.07
KRH37112	Soybean	golgi, mitochondrion	81.51	81.33
VIT_05s0020g01530.t01	Wine grape	mitochondrion	83.74	80.69
KRG96428	Soybean	mitochondrion	81.07	80.0
GSMUA_Achr1P24760_001	Banana	mitochondrion	76.39	79.4
CDX93965	Canola	mitochondrion	80.62	79.04
CDY70418	Canola	golgi, mitochondrion	80.62	78.7
PGSC0003DMT400058812	Potato	mitochondrion	79.96	77.37
GSMUA_Achr8P22410_001	Banana	golgi, mitochondrion	73.72	77.16
EER92398	Sorghum	golgi	75.28	75.78
Zm00001d047694_P001	Maize	golgi	75.5	75.67
Zm00001d028811_P001	Maize	plasma membrane	75.28	75.62
Zm00001d025851_P001	Maize	cytosol	60.8	75.41
KRH12052	Soybean	mitochondrion	44.54	74.91
CDY11443	Canola	cytosol	9.8	74.58
Zm00001d051264_P001	Maize	mitochondrion, plastid	65.7	74.31
HORVU4Hr1G054910.1	Barley	golgi, mitochondrion	73.05	72.57
CDY11441	Canola	mitochondrion	30.51	72.49
TraesCS4D01G189500.1	Wheat	golgi, mitochondrion	72.38	72.06
TraesCS4B01G188100.1	Wheat	golgi, mitochondrion	72.38	72.06
TraesCS4A01G116100.2	Wheat	golgi, mitochondrion	72.38	71.9
CDX76657	Canola	mitochondrion	30.73	71.88
TraesCS1B01G115300.1	Wheat	golgi, mitochondrion	72.83	70.02
KRH68171	Soybean	golgi, mitochondrion	36.75	68.46
CDX73082	Canola	cytosol	33.63	68.02
CDX96540	Canola	cytosol	33.63	68.02
CDX85826	Canola	cytosol	33.41	67.26
CDX68187	Canola	cytosol	33.41	67.26
CDY49114	Canola	peroxisome	20.49	65.71
Solyc01g067930.2.1	Tomato	mitochondrion	29.62	63.33
Zm00001d035801_P001	Maize	mitochondrion, nucleus, plastid	25.84	60.1
CDY11442	Canola	cytosol, extracellular, mitochondrion, plastid	10.91	57.65
CDX99024	Canola	cytosol, golgi, peroxisome, plastid	54.79	54.19
CDX69995	Canola	cytosol	54.57	53.85
CDY19235	Canola	cytosol, golgi, plasma membrane, plastid	50.33	50.0
CDY26738	Canola	golgi, mitochondrion, plasma membrane, plastid	51.22	47.72
CDX76887	Canola	golgi, plastid	33.41	33.48
CDY49440	Canola	golgi	33.41	33.48
CDX72649	Canola	golgi	32.52	33.33
CDY29577	Canola	golgi	32.52	33.33

Protein Annotations

EnsemblPlants:CDX90935	EnsemblPlantsGene:GSBRNA2T00151675001	Gene3D:3.90.550.10	GO:A0A078DNX8	GO:GO:0003674	GO:GO:0003824
GO:GO:0005575	GO:GO:0016020	GO:GO:0016021	GO:GO:0016740	GO:GO:0016757	InterPro:Glyco_trans_34
InterPro:IPR029044	InterPro:Nucleotide-diphossugar_trans	PANTHER:PTHR31311	PANTHER:PTHR31311:SF6	PFAM:PF05637	ProteinID:CDX90935
ProteinID:CDX90935.1	SEG:seg	TMHMM:TMhelix	UniParc:UPI0004EF1A64	MapMan:21.2.1.1.2	:

Description

BnaA03g26150D

Coordinates

chrLK031864:-:1426613..1429032

Molecular Weight (calculated)

51779.2 Da

IEP (calculated)

8.030

GRAVY (calculated)

-0.512

Length

449 amino acids

Sequence
(BLAST)

001: MIERCLGAHR CRRIQRALRH LKVTVLCLVL TVVVLRGTIG AGKFGTPEQD LDEIRQHFQT SRKRAEPHHS GDGGGAGSNN YETFDINKIF VDEGEEEKPD
101: PNKPYTLGPK ISDWDEQRSD WLSKNPSFPN FIGPNKPRVL LVTGSAPKPC ENPVGDHYLL KSIKNKIDYC RLHGIEIFYN MALLDAEMAG FWAKLPLIRK
201: LLLSHPEIEF LWWMDSDAMF TDMAFELPWE RYKDYNLVMH GWNEMVYDDK NWIGLNTGSF LLRNNQWALD LLDTWAPMGP KGKIREEAGK VLTRGLKGRP
301: VFEADDQSAM VYLLATQRDT WGNKVYLENG YYLHGYWGIL VDRYKEMIEN YHPGLGDHRW PLVTHFVGCK PCGKFGDYPV ERCLKQMDRA FNFGDNQILQ
401: IYGFTHKSLA SRKVKRVRNE TSNPLEMKDE LGLLHPAFKA VKVQQTNQV

Best Arabidopsis Sequence Match ( AT4G02500.1 )
(BLAST)

001: MIERCLGAYR CRRIQRALRQ LKVTILCLLL TVVVLRSTIG AGKFGTPEQD LDEIRQHFHA RKRGEPHRVL EEIQTGGDSS SGDGGGNSGG SNNYETFDIN
101: KIFVDEGEEE KPDPNKPYTL GPKISDWDEQ RSDWLAKNPS FPNFIGPNKP RVLLVTGSAP KPCENPVGDH YLLKSIKNKI DYCRLHGIEI FYNMALLDAE
201: MAGFWAKLPL IRKLLLSHPE IEFLWWMDSD AMFTDMAFEL PWERYKDYNL VMHGWNEMVY DQKNWIGLNT GSFLLRNNQW ALDLLDTWAP MGPKGKIREE
301: AGKVLTRELK DRPVFEADDQ SAMVYLLATQ RDAWGNKVYL ESGYYLHGYW GILVDRYEEM IENYHPGLGD HRWPLVTHFV GCKPCGKFGD YPVERCLKQM
401: DRAFNFGDNQ ILQIYGFTHK SLASRKVKRV RNETSNPLEM KDELGLLHPA FKAVKVQTNQ V

Arabidopsis Description

XXT2Xyloglucan 6-xylosyltransferase 2 [Source:UniProtKB/Swiss-Prot;Acc:O22775]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.