Factsheet for VIT_07s0005g00150.t01

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 2
mitochondrion 5
golgi 1
cytosol 2

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_05s0020g01530.t01	golgi, golgi
VIT_07s0005g00150.t01	golgi, golgi
VIT_17s0000g06590.t01	golgi, golgi

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G62720.1	VIT_17s0000g06590.t01	AT1G74380.1	22665445
AT3G62720.1	VIT_05s0020g01530.t01	AT4G02500.1	22665445
AT3G62720.1	VIT_07s0005g00150.t01	AT4G02500.1	22665445
AT4G02500.1	VIT_17s0000g06590.t01	AT1G74380.1	22665445
AT4G02500.1	VIT_05s0020g01530.t01	AT4G02500.1	22665445
AT4G02500.1	VIT_07s0005g00150.t01	AT4G02500.1	22665445

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_05s0020g01530.t01	Wine grape	mitochondrion	87.61	84.98
CDY22055	Canola	mitochondrion	84.29	84.86
CDX90935	Canola	mitochondrion	84.07	84.63
Zm00001d026023_P001	Maize	endoplasmic reticulum, golgi	49.56	84.53
Bra036262.1-P	Field mustard	mitochondrion	86.28	84.42
AT4G02500.1	Thale cress	mitochondrion	86.06	84.38
Bra018545.1-P	Field mustard	mitochondrion	85.62	83.77
Bra000877.1-P	Field mustard	mitochondrion	85.62	83.59
Os03t0300000-01	Rice	cytosol	63.72	82.76
CDY70090	Canola	mitochondrion	64.6	82.49
KRG96428	Soybean	mitochondrion	82.96	82.42
CDY18017	Canola	mitochondrion	61.06	82.39
CDY50378	Canola	cytosol	83.63	80.6
GSMUA_Achr1P24760_001	Banana	mitochondrion	76.99	80.56
PGSC0003DMT400058812	Potato	mitochondrion	82.08	79.96
AT3G62720.1	Thale cress	mitochondrion	81.19	79.78
Bra007696.1-P	Field mustard	mitochondrion	80.31	79.61
CDX97271	Canola	mitochondrion	47.12	79.18
CDY11443	Canola	cytosol	10.18	77.97
GSMUA_Achr8P22410_001	Banana	golgi, mitochondrion	73.89	77.86
Bra014396.1-P	Field mustard	mitochondrion	78.98	77.78
CDY70418	Canola	golgi, mitochondrion	78.98	77.61
CDX93965	Canola	mitochondrion	78.32	77.29
CDY65940	Canola	mitochondrion	45.13	76.69
Zm00001d025851_P001	Maize	cytosol	61.06	76.24
Zm00001d028811_P001	Maize	plasma membrane	74.56	75.39
Zm00001d051264_P001	Maize	mitochondrion, plastid	65.71	74.81
EER92398	Sorghum	golgi	73.67	74.66
Zm00001d047694_P001	Maize	golgi	73.89	74.55
KRH68171	Soybean	golgi, mitochondrion	39.16	73.44
CDX76657	Canola	mitochondrion	30.75	72.4
HORVU4Hr1G054910.1	Barley	golgi, mitochondrion	72.35	72.35
TraesCS4B01G188100.1	Wheat	golgi, mitochondrion	72.12	72.28
TraesCS4A01G116100.2	Wheat	golgi, mitochondrion	71.9	71.9
TraesCS4D01G189500.1	Wheat	golgi, mitochondrion	71.68	71.84
TraesCS1B01G115300.1	Wheat	golgi, mitochondrion	71.68	69.38
Solyc01g067930.2.1	Tomato	mitochondrion	31.42	67.62
CDY11441	Canola	mitochondrion	28.1	67.2
Zm00001d035801_P001	Maize	mitochondrion, nucleus, plastid	26.55	62.18
VIT_17s0000g06590.t01	Wine grape	cytosol, golgi, plasma membrane, plastid	57.3	57.56
CDY11442	Canola	cytosol, extracellular, mitochondrion, plastid	10.62	56.47
VIT_00s0322g00030.t01	Wine grape	mitochondrion	25.89	34.11

Protein Annotations

EntrezGene:100262459	wikigene:100262459	MapMan:21.2.1.1.2	Gene3D:3.90.550.10	UniProt:A5BRM5	EMBL:AM468539
ProteinID:CAN59912	ProteinID:CAN59912.1	ProteinID:CCB59948	ProteinID:CCB59948.1	EMBL:FN596502	GO:GO:0003674
GO:GO:0003824	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005768
GO:GO:0005794	GO:GO:0005802	GO:GO:0005975	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009969	GO:GO:0009987	GO:GO:0016020	GO:GO:0016021	GO:GO:0016740	GO:GO:0016757
GO:GO:0016758	GO:GO:0033843	GO:GO:0035252	InterPro:Glyco_trans_34	InterPro:IPR029044	EntrezGene:LOC100262459
wikigene:LOC100262459	InterPro:Nucleotide-diphossugar_trans	PFAM:PF05637	PANTHER:PTHR31311	PANTHER:PTHR31311:SF6	TMHMM:TMhelix
UniParc:UPI000152168C	ArrayExpress:VIT_07s0005g00150	EnsemblPlantsGene:VIT_07s0005g00150	EnsemblPlants:VIT_07s0005g00150.t01	unigene:Vvi.25412	RefSeq:XP_002263821
RefSeq:XP_002263821.2	RefSeq:XP_010652172.1	SEG:seg	:	:	:

Description

No Description!

Coordinates

chr7:-:2932390..2933817

Molecular Weight (calculated)

52333.7 Da

IEP (calculated)

7.378

GRAVY (calculated)

-0.478

Length

452 amino acids

Sequence
(BLAST)

001: MIERCLGARR ARQIHRALRH FKVTILCLVM TIVVLRGTIG AGKFGTPEQD FVEIRDHFSP RKRAEPHRVL EEVQTTSSSS SELNNYATFD LNKLLVDEED
101: DSEKPDPKKP YSLGPKISDW DEQRSTWLEQ NPNFPNFIGP NKPRVLLVTG SSPKPCENPV GDHYLLKSIK NKIDYCRLHG IEIFYNMALL DAEMAGFWAK
201: LPLIRKLLLS HPEVEFLWWM DSDAMFTDMA FELPWERYKD YNFVMHGWNE MVYDQKNWIG LNTGSFLLRN CQWSLDILDA WAPMGPKGKI RTEAGKILTR
301: ELKDRPVFEA DDQSAMVYLL ATQKDTWGGK VYLESAYYLH GYWGILVDRY EEMIENYHPG LGDHRWPLVT HFVGCKPCGK FGDYPVERCL KQMDRAFNFG
401: DNQVLQIYGF THKSLGSRRV KRTRNDTNNP LEVKDELGLL HPAFKAVKVS SS

Best Arabidopsis Sequence Match ( AT4G02500.1 )
(BLAST)

001: MIERCLGAYR CRRIQRALRQ LKVTILCLLL TVVVLRSTIG AGKFGTPEQD LDEIRQHFHA RKRGEPHRVL EEIQTGGDSS SGDGGGNSGG SNNYETFDIN
101: KIFVDEGEEE KPDPNKPYTL GPKISDWDEQ RSDWLAKNPS FPNFIGPNKP RVLLVTGSAP KPCENPVGDH YLLKSIKNKI DYCRLHGIEI FYNMALLDAE
201: MAGFWAKLPL IRKLLLSHPE IEFLWWMDSD AMFTDMAFEL PWERYKDYNL VMHGWNEMVY DQKNWIGLNT GSFLLRNNQW ALDLLDTWAP MGPKGKIREE
301: AGKVLTRELK DRPVFEADDQ SAMVYLLATQ RDAWGNKVYL ESGYYLHGYW GILVDRYEEM IENYHPGLGD HRWPLVTHFV GCKPCGKFGD YPVERCLKQM
401: DRAFNFGDNQ ILQIYGFTHK SLASRKVKRV RNETSNPLEM KDELGLLHPA FKAVKVQTNQ V

Arabidopsis Description

XXT2Xyloglucan 6-xylosyltransferase 2 [Source:UniProtKB/Swiss-Prot;Acc:O22775]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.