Factsheet for Bra007696.1-P

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 1
mitochondrion 5
golgi 2
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra000877.1-P	golgi
Bra003804.1-P	golgi
Bra008146.1-P	golgi
Bra015915.1-P	golgi
Bra018545.1-P	golgi
Bra036262.1-P	golgi

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G62720.1	Bra003804.1-P	AT1G74380.1	22665445
AT3G62720.1	Bra008146.1-P	AT1G74380.1	22665445
AT3G62720.1	Bra015915.1-P	AT1G74380.1	22665445
AT3G62720.1	Bra000877.1-P	AT4G02500.1	22665445
AT3G62720.1	Bra018545.1-P	AT4G02500.1	22665445
AT3G62720.1	Bra036262.1-P	AT4G02500.1	22665445

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
AT3G62720.1	Thale cress	mitochondrion	92.98	92.17
Bra014396.1-P	Field mustard	mitochondrion	92.32	91.72
CDX76657	Canola	mitochondrion	36.4	86.46
Bra000877.1-P	Field mustard	mitochondrion	84.21	82.94
Zm00001d026023_P001	Maize	endoplasmic reticulum, golgi	47.81	82.26
Bra018545.1-P	Field mustard	mitochondrion	83.11	82.03
Bra036262.1-P	Field mustard	mitochondrion	83.11	82.03
Os03t0300000-01	Rice	cytosol	62.06	81.32
VIT_07s0005g00150.t01	Wine grape	mitochondrion	79.61	80.31
KRH37112	Soybean	golgi, mitochondrion	77.19	78.22
KRG96428	Soybean	mitochondrion	77.63	77.8
VIT_05s0020g01530.t01	Wine grape	mitochondrion	79.39	77.68
GSMUA_Achr1P24760_001	Banana	mitochondrion	72.59	76.62
PGSC0003DMT400058812	Potato	mitochondrion	76.75	75.43
GSMUA_Achr8P22410_001	Banana	golgi, mitochondrion	68.64	72.96
Zm00001d025851_P001	Maize	cytosol	57.89	72.93
KRH12052	Soybean	mitochondrion	42.54	72.66
Zm00001d028811_P001	Maize	plasma membrane	70.83	72.26
EER92398	Sorghum	golgi	70.61	72.2
Zm00001d047694_P001	Maize	golgi	70.61	71.88
Zm00001d051264_P001	Maize	mitochondrion, plastid	62.28	71.54
TraesCS4B01G188100.1	Wheat	golgi, mitochondrion	68.86	69.62
HORVU4Hr1G054910.1	Barley	golgi, mitochondrion	68.86	69.47
TraesCS4D01G189500.1	Wheat	golgi, mitochondrion	68.64	69.4
TraesCS4A01G116100.2	Wheat	golgi, mitochondrion	68.42	69.03
KRH68171	Soybean	golgi, mitochondrion	36.18	68.46
TraesCS1B01G115300.1	Wheat	golgi, mitochondrion	68.64	67.02
Bra008146.1-P	Field mustard	cytosol	31.36	64.13
Solyc01g067930.2.1	Tomato	mitochondrion	28.73	62.38
Zm00001d035801_P001	Maize	mitochondrion, nucleus, plastid	25.44	60.1
Bra015915.1-P	Field mustard	plastid	53.73	53.73
Bra009305.1-P	Field mustard	cytosol	53.07	53.19
Bra003804.1-P	Field mustard	plastid	52.63	52.52
Bra025677.1-P	Field mustard	golgi, mitochondrion, plasma membrane, plastid	50.66	45.92
Bra017847.1-P	Field mustard	golgi	32.02	33.33
Bra039938.1-P	Field mustard	golgi, plastid	32.02	32.59

Protein Annotations

EnsemblPlants:Bra007696.1	EnsemblPlants:Bra007696.1-P	EnsemblPlantsGene:Bra007696	Gene3D:3.90.550.10	GO:GO:0003674	GO:GO:0003824
GO:GO:0005575	GO:GO:0016020	GO:GO:0016021	GO:GO:0016740	GO:GO:0016757	InterPro:Glyco_trans_34
InterPro:IPR029044	InterPro:Nucleotide-diphossugar_trans	PANTHER:PTHR31311	PANTHER:PTHR31311:SF6	PFAM:PF05637	SEG:seg
TMHMM:TMhelix	UniParc:UPI0002542B30	UniProt:M4CU02	MapMan:21.2.1.1.2	:	:

Description

AT3G62720 (E=2e-256) ATXT1, XT1, XXT1 | XT1 (XYLOSYLTRANSFERASE 1); UDP-xylosyltransferase/ transferase/ transferase, transferring glycosyl groups / xyloglucan 6-xylosyltransferase

Coordinates

chrA09:+:30443285..30444655

Molecular Weight (calculated)

53013.4 Da

IEP (calculated)

6.985

GRAVY (calculated)

-0.554

Length

456 amino acids

Sequence
(BLAST)

001: MIEKCLGTHR CRKLQRVWRQ GKVTLLCLVL TVVVLRGTIG AGKFGTPEQD IEEIREHFFY SRKRAEPHRV LVEISSETTS STGDGNGNNY ETFDFNKIFV
101: DEGDEEKSEE NRNKPYSLGP KISDWDEQRR DWLKQNPSFP NFVAPNKPRV LLVTGSAPKP CENPVGDHYL LKSIKNKIDY CRIHGIEIFY NMALLDAEMA
201: GFWAKLPLIR KLLLSHPEIE FLWWMDSDAM FTDMVFELPW ERYEDYNLVM HGWNEMVYEQ KNWIGLNTGS FLLRNSQWAL DLLDAWAPMG PKGKVREEAG
301: KVLTRELKDR PAFEADDQSA MVYLLATERE KWGGKVYLES GYYLHGYWGI LVDRYEEMIE SHKPGFGDHR WPLVTHFVGC KPCGKFGDYP VERCLRQMDR
401: AFNFGDNQIL QMYGFTHKSL GSRRVKPTRN QTDRPLDAKD EFGLLHPSFK AVKLTT

Best Arabidopsis Sequence Match ( AT3G62720.1 )
(BLAST)

001: MIEKCIGAHR FRRLQRFMRQ GKVTILCLVL TVIVLRGTIG AGKFGTPEKD IEEIREHFFY TRKRGEPHRV LVEVSSKTTS SEDGGNGGNS YETFDINKLF
101: VDEGDEEKSR DRTNKPYSLG PKISDWDEQR RDWLKQNPSF PNFVAPNKPR VLLVTGSAPK PCENPVGDHY LLKSIKNKID YCRIHGIEIF YNMALLDAEM
201: AGFWAKLPLI RKLLLSHPEI EFLWWMDSDA MFTDMVFELP WERYKDYNLV MHGWNEMVYD QKNWIGLNTG SFLLRNSQWS LDLLDAWAPM GPKGKIREEA
301: GKVLTRELKD RPAFEADDQS AMVYLLATER EKWGGKVYLE SGYYLHGYWG ILVDRYEEMI ENHKPGFGDH RWPLVTHFVG CKPCGKFGDY PVERCLRQMD
401: RAFNFGDNQI LQMYGFTHKS LGSRRVKPTR NQTDRPLDAK DEFGLLHPPF KAAKLSTTTT

Arabidopsis Description

XXT1XXT1 [Source:UniProtKB/TrEMBL;Acc:A0A178VEJ0]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.