Factsheet for Bra014396.1-P

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 1
mitochondrion 5
golgi 2
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra000877.1-P	golgi
Bra003804.1-P	golgi
Bra008146.1-P	golgi
Bra015915.1-P	golgi
Bra018545.1-P	golgi
Bra036262.1-P	golgi

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G62720.1	Bra003804.1-P	AT1G74380.1	22665445
AT3G62720.1	Bra008146.1-P	AT1G74380.1	22665445
AT3G62720.1	Bra015915.1-P	AT1G74380.1	22665445
AT3G62720.1	Bra000877.1-P	AT4G02500.1	22665445
AT3G62720.1	Bra018545.1-P	AT4G02500.1	22665445
AT3G62720.1	Bra036262.1-P	AT4G02500.1	22665445

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY70418	Canola	golgi, mitochondrion	99.13	98.91
Bra007696.1-P	Field mustard	mitochondrion	91.72	92.32
AT3G62720.1	Thale cress	mitochondrion	89.98	89.78
CDY11441	Canola	mitochondrion	34.86	84.66
CDY11443	Canola	cytosol	10.68	83.05
Os03t0300000-01	Rice	cytosol	61.0	80.46
Zm00001d026023_P001	Maize	endoplasmic reticulum, golgi	46.19	80.0
Bra000877.1-P	Field mustard	mitochondrion	80.61	79.91
Bra018545.1-P	Field mustard	mitochondrion	79.96	79.44
Bra036262.1-P	Field mustard	mitochondrion	79.96	79.44
VIT_07s0005g00150.t01	Wine grape	mitochondrion	77.78	78.98
KRH37112	Soybean	golgi, mitochondrion	75.16	76.67
KRG96428	Soybean	mitochondrion	75.6	76.26
VIT_05s0020g01530.t01	Wine grape	mitochondrion	77.34	76.18
GSMUA_Achr1P24760_001	Banana	mitochondrion	71.46	75.93
PGSC0003DMT400058812	Potato	mitochondrion	75.16	74.35
GSMUA_Achr8P22410_001	Banana	golgi, mitochondrion	67.54	72.26
Zm00001d025851_P001	Maize	cytosol	56.64	71.82
Zm00001d028811_P001	Maize	plasma membrane	69.06	70.92
EER92398	Sorghum	golgi	68.85	70.85
KRH12052	Soybean	mitochondrion	41.18	70.79
Zm00001d047694_P001	Maize	golgi	68.85	70.54
Zm00001d051264_P001	Maize	mitochondrion, plastid	60.57	70.03
HORVU4Hr1G054910.1	Barley	golgi, mitochondrion	67.32	68.36
TraesCS4B01G188100.1	Wheat	golgi, mitochondrion	66.88	68.07
TraesCS4D01G189500.1	Wheat	golgi, mitochondrion	66.88	68.07
TraesCS4A01G116100.2	Wheat	golgi, mitochondrion	66.88	67.92
KRH68171	Soybean	golgi, mitochondrion	35.29	67.22
TraesCS1B01G115300.1	Wheat	golgi, mitochondrion	66.88	65.74
Bra008146.1-P	Field mustard	cytosol	30.72	63.23
Solyc01g067930.2.1	Tomato	mitochondrion	28.32	61.9
Zm00001d035801_P001	Maize	mitochondrion, nucleus, plastid	25.05	59.59
CDY11442	Canola	cytosol, extracellular, mitochondrion, plastid	10.89	58.82
Bra009305.1-P	Field mustard	cytosol	53.16	53.63
Bra015915.1-P	Field mustard	plastid	52.94	53.29
Bra003804.1-P	Field mustard	plastid	51.85	52.08
Bra025677.1-P	Field mustard	golgi, mitochondrion, plasma membrane, plastid	49.46	45.13
Bra017847.1-P	Field mustard	golgi	32.9	34.47
Bra039938.1-P	Field mustard	golgi, plastid	32.9	33.71

Protein Annotations

EnsemblPlants:Bra014396.1	EnsemblPlants:Bra014396.1-P	EnsemblPlantsGene:Bra014396	Gene3D:3.90.550.10	GO:GO:0003674	GO:GO:0003824
GO:GO:0005575	GO:GO:0016020	GO:GO:0016021	GO:GO:0016740	GO:GO:0016757	InterPro:Glyco_trans_34
InterPro:IPR029044	InterPro:Nucleotide-diphossugar_trans	PANTHER:PTHR31311	PANTHER:PTHR31311:SF6	PFAM:PF05637	SEG:seg
TMHMM:TMhelix	UniParc:UPI0002545443	UniProt:M4DD28	MapMan:21.2.1.1.2	:	:

Description

AT3G62720 (E=9e-237) ATXT1, XT1, XXT1 | XT1 (XYLOSYLTRANSFERASE 1); UDP-xylosyltransferase/ transferase/ transferase, transferring glycosyl groups / xyloglucan 6-xylosyltransferase

Coordinates

chrA04:-:301726..303105

Molecular Weight (calculated)

53022.4 Da

IEP (calculated)

8.065

GRAVY (calculated)

-0.503

Length

459 amino acids

Sequence
(BLAST)

001: MIEKCIGTQR LRRLQRVWRQ GKVTLLCLVL TVVVLRGTIG AGKFGTPEQD IEEIREHFFY SRKRAETHRV LVELSSSSKT TSSSAAGNSN NNNNYETFDF
101: KKIFADEGDE EKALDRSKPY SLGPKISDWD EQRRDWLKQN PSFPNFVAAN KPRVLLVTGS APKPCENPVG DHYLLKSIKN KIDYCRIHGI EIFYNMALLD
201: AEMAGFWAKL PLIRKLLLSH PEIEFLWWMD SDAMFTDMVF ELPWERYEDY NLVMHGWKEM VYDQKSWIGL NTGSFLIRNS QWALDLLDAW APMGPKGKIR
301: EEAGKVLTRE LKDRPAFEAD DQSAMVYLLA TEREKWGGKV YLESGYYLHG YWGILVDRYE EMIENHKPGF GDHRWPLVTH FVGCKPCGKF GDYPVERCLR
401: QMDRAFNFGD NQILQMYGFT HKSLGSRSVK PTRSQTGRPV DVKDEFGLLH PPFKAATST

Best Arabidopsis Sequence Match ( AT3G62720.1 )
(BLAST)

001: MIEKCIGAHR FRRLQRFMRQ GKVTILCLVL TVIVLRGTIG AGKFGTPEKD IEEIREHFFY TRKRGEPHRV LVEVSSKTTS SEDGGNGGNS YETFDINKLF
101: VDEGDEEKSR DRTNKPYSLG PKISDWDEQR RDWLKQNPSF PNFVAPNKPR VLLVTGSAPK PCENPVGDHY LLKSIKNKID YCRIHGIEIF YNMALLDAEM
201: AGFWAKLPLI RKLLLSHPEI EFLWWMDSDA MFTDMVFELP WERYKDYNLV MHGWNEMVYD QKNWIGLNTG SFLLRNSQWS LDLLDAWAPM GPKGKIREEA
301: GKVLTRELKD RPAFEADDQS AMVYLLATER EKWGGKVYLE SGYYLHGYWG ILVDRYEEMI ENHKPGFGDH RWPLVTHFVG CKPCGKFGDY PVERCLRQMD
401: RAFNFGDNQI LQMYGFTHKS LGSRRVKPTR NQTDRPLDAK DEFGLLHPPF KAAKLSTTTT

Arabidopsis Description

XXT1XXT1 [Source:UniProtKB/TrEMBL;Acc:A0A178VEJ0]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.