Factsheet for Bra018545.1-P

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 1
mitochondrion 5
golgi 1
cytosol 2

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra000877.1-P	golgi
Bra003804.1-P	golgi
Bra008146.1-P	golgi
Bra015915.1-P	golgi
Bra018545.1-P	golgi
Bra036262.1-P	golgi

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G02500.1	Bra003804.1-P	AT1G74380.1	22665445
AT4G02500.1	Bra008146.1-P	AT1G74380.1	22665445
AT4G02500.1	Bra015915.1-P	AT1G74380.1	22665445
AT4G02500.1	Bra000877.1-P	AT4G02500.1	22665445
AT4G02500.1	Bra018545.1-P	AT4G02500.1	22665445
AT4G02500.1	Bra036262.1-P	AT4G02500.1	22665445

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY70090	Canola	mitochondrion	74.68	97.46
CDX97271	Canola	mitochondrion	56.49	97.03
Bra000877.1-P	Field mustard	mitochondrion	95.67	95.46
Bra036262.1-P	Field mustard	mitochondrion	95.45	95.45
AT4G02500.1	Thale cress	mitochondrion	94.59	94.79
CDY65940	Canola	mitochondrion	54.33	94.36
VIT_07s0005g00150.t01	Wine grape	mitochondrion	83.77	85.62
Zm00001d026023_P001	Maize	endoplasmic reticulum, golgi	48.92	85.28
Os03t0300000-01	Rice	cytosol	63.2	83.91
Bra007696.1-P	Field mustard	mitochondrion	82.03	83.11
KRH37112	Soybean	golgi, mitochondrion	80.74	82.89
VIT_05s0020g01530.t01	Wine grape	mitochondrion	82.25	81.55
KRG96428	Soybean	mitochondrion	79.44	80.66
Bra014396.1-P	Field mustard	mitochondrion	79.44	79.96
GSMUA_Achr1P24760_001	Banana	mitochondrion	74.46	79.63
PGSC0003DMT400058812	Potato	mitochondrion	79.44	79.09
KRH12052	Soybean	mitochondrion	45.02	77.9
GSMUA_Achr8P22410_001	Banana	golgi, mitochondrion	71.21	76.69
Zm00001d025851_P001	Maize	cytosol	59.52	75.97
EER92398	Sorghum	golgi	73.16	75.78
Zm00001d047694_P001	Maize	golgi	73.38	75.67
Zm00001d028811_P001	Maize	plasma membrane	73.16	75.62
Zm00001d051264_P001	Maize	mitochondrion, plastid	64.29	74.81
HORVU4Hr1G054910.1	Barley	golgi, mitochondrion	71.21	72.79
TraesCS4B01G188100.1	Wheat	golgi, mitochondrion	70.56	72.28
TraesCS4D01G189500.1	Wheat	golgi, mitochondrion	70.56	72.28
TraesCS4A01G116100.2	Wheat	golgi, mitochondrion	70.56	72.12
TraesCS1B01G115300.1	Wheat	golgi, mitochondrion	71.0	70.24
KRH68171	Soybean	golgi, mitochondrion	36.58	70.12
Solyc01g067930.2.1	Tomato	mitochondrion	30.3	66.67
Bra008146.1-P	Field mustard	cytosol	31.82	65.92
Zm00001d035801_P001	Maize	mitochondrion, nucleus, plastid	25.97	62.18
Bra015915.1-P	Field mustard	plastid	54.33	55.04
Bra009305.1-P	Field mustard	cytosol	53.9	54.73
Bra003804.1-P	Field mustard	plastid	54.11	54.7
Bra025677.1-P	Field mustard	golgi, mitochondrion, plasma membrane, plastid	50.87	46.72
Bra039938.1-P	Field mustard	golgi, plastid	32.25	33.26
Bra017847.1-P	Field mustard	golgi	31.17	32.88

Protein Annotations

EnsemblPlants:Bra018545.1	EnsemblPlants:Bra018545.1-P	EnsemblPlantsGene:Bra018545	Gene3D:3.90.550.10	GO:GO:0003674	GO:GO:0003824
GO:GO:0005575	GO:GO:0016020	GO:GO:0016021	GO:GO:0016740	GO:GO:0016757	InterPro:Glyco_trans_34
InterPro:IPR029044	InterPro:Nucleotide-diphossugar_trans	PANTHER:PTHR31311	PANTHER:PTHR31311:SF6	PFAM:PF05637	SEG:seg
TMHMM:TMhelix	UniParc:UPI0002547329	UniProt:M4DPV4	MapMan:21.2.1.1.2	:	:

Description

AT4G02500 (E=3e-250) ATXT2, XXT2, XT2 | XT2 (UDP-XYLOSYLTRANSFERASE 2); UDP-xylosyltransferase/ transferase/ transferase, transferring glycosyl groups / xyloglucan 6-xylosyltransferase

Coordinates

chrA05:-:9109807..9111597

Molecular Weight (calculated)

53026.7 Da

IEP (calculated)

7.378

GRAVY (calculated)

-0.498

Length

462 amino acids

Sequence
(BLAST)

001: MMERCLGANR CRRIQRALRH LKVTVLCLVL TIVVLRGTIG AGKFGTPEQD LDEIRQHIYT SRKRAEPHRV LEEIQTGGDS SSSGGGGGGG SNNYETFDIN
101: KIFVDEGEEE KPDPNKPYTL GPKISDWDEQ RSDWLAKNPT FPNFIGPNKP RVLLVTGSAP KPCENPVGDH YLLKSIKNKI DYCRLHGIEI FYNMALLDAE
201: MAGFWAKLPL IRKLLLSHPE IEFLWWMDSD AMFTDMAFEL PWERYKDYNL VMHGWNEMVY DEKNWIGLNT GSFLLRNNQW ALDLLDTWAP MGPKGKIREE
301: AGKVLTRELK GRPVFEADDQ SAMVYLLATQ RATWGNKVYL ENGYYLHGYW GILVDKYEEM IENHHPGLGD HRWPLVTHFV GCKPCGKFGD YPVERCLKQM
401: DRAFNFGDNQ ILQIYGFTHK SLASRKVKRV RNETSNPLEM KDELGLLHPA FKAVKVQQTN QV

Best Arabidopsis Sequence Match ( AT4G02500.1 )
(BLAST)

001: MIERCLGAYR CRRIQRALRQ LKVTILCLLL TVVVLRSTIG AGKFGTPEQD LDEIRQHFHA RKRGEPHRVL EEIQTGGDSS SGDGGGNSGG SNNYETFDIN
101: KIFVDEGEEE KPDPNKPYTL GPKISDWDEQ RSDWLAKNPS FPNFIGPNKP RVLLVTGSAP KPCENPVGDH YLLKSIKNKI DYCRLHGIEI FYNMALLDAE
201: MAGFWAKLPL IRKLLLSHPE IEFLWWMDSD AMFTDMAFEL PWERYKDYNL VMHGWNEMVY DQKNWIGLNT GSFLLRNNQW ALDLLDTWAP MGPKGKIREE
301: AGKVLTRELK DRPVFEADDQ SAMVYLLATQ RDAWGNKVYL ESGYYLHGYW GILVDRYEEM IENYHPGLGD HRWPLVTHFV GCKPCGKFGD YPVERCLKQM
401: DRAFNFGDNQ ILQIYGFTHK SLASRKVKRV RNETSNPLEM KDELGLLHPA FKAVKVQTNQ V

Arabidopsis Description

XXT2Xyloglucan 6-xylosyltransferase 2 [Source:UniProtKB/Swiss-Prot;Acc:O22775]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.