CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 1
mitochondrion 5
golgi 2
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
KRG96428	golgi, golgi
KRH03516	golgi, golgi
KRH12052	golgi, golgi
KRH37112	golgi, golgi
KRH56886	golgi, golgi
KRH68171	golgi, golgi

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G62720.1	KRH03516	AT1G74380.1	22665445
AT3G62720.1	KRH56886	AT1G74380.1	22665445
AT3G62720.1	KRG96428	AT4G02500.1	22665445
AT3G62720.1	KRH12052	AT4G02500.1	22665445
AT3G62720.1	KRH37112	AT4G02500.1	22665445
AT3G62720.1	KRH68171	AT4G02500.1	22665445
AT4G02500.1	KRH03516	AT1G74380.1	22665445
AT4G02500.1	KRH56886	AT1G74380.1	22665445
AT4G02500.1	KRG96428	AT4G02500.1	22665445
AT4G02500.1	KRH12052	AT4G02500.1	22665445
AT4G02500.1	KRH37112	AT4G02500.1	22665445
AT4G02500.1	KRH68171	AT4G02500.1	22665445

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH68171	Soybean	golgi, mitochondrion	47.91	90.46
Zm00001d026023_P001	Maize	endoplasmic reticulum, golgi	50.11	86.04
VIT_07s0005g00150.t01	Wine grape	mitochondrion	82.42	82.96
Os03t0300000-01	Rice	cytosol	63.3	82.76
CDX90935	Canola	mitochondrion	80.0	81.07
KRH37112	Soybean	golgi, mitochondrion	79.78	80.67
CDY22055	Canola	mitochondrion	78.9	79.96
Bra000877.1-P	Field mustard	mitochondrion	81.1	79.7
Bra018545.1-P	Field mustard	mitochondrion	80.66	79.44
AT4G02500.1	Thale cress	mitochondrion	80.44	79.39
Bra036262.1-P	Field mustard	mitochondrion	80.22	79.0
CDY18017	Canola	mitochondrion	58.02	78.81
Bra007696.1-P	Field mustard	mitochondrion	77.8	77.63
GSMUA_Achr1P24760_001	Banana	mitochondrion	73.41	77.31
AT3G62720.1	Thale cress	mitochondrion	77.8	76.96
CDY70090	Canola	mitochondrion	59.78	76.84
Zm00001d025851_P001	Maize	cytosol	61.1	76.8
Bra014396.1-P	Field mustard	mitochondrion	76.26	75.6
CDY70418	Canola	golgi, mitochondrion	76.26	75.43
CDX93965	Canola	mitochondrion	75.6	75.11
CDY50378	Canola	cytosol	77.14	74.84
PGSC0003DMT400058812	Potato	mitochondrion	76.04	74.57
Zm00001d051264_P001	Maize	mitochondrion, plastid	65.05	74.56
GSMUA_Achr8P22410_001	Banana	golgi, mitochondrion	70.11	74.36
Zm00001d047694_P001	Maize	golgi	72.97	74.11
EER92398	Sorghum	golgi	72.53	73.99
CDX97271	Canola	mitochondrion	43.74	73.98
Zm00001d028811_P001	Maize	plasma membrane	72.53	73.83
CDX76657	Canola	mitochondrion	30.77	72.92
CDY11443	Canola	cytosol	9.45	72.88
CDY65940	Canola	mitochondrion	41.98	71.8
HORVU4Hr1G054910.1	Barley	golgi, mitochondrion	70.99	71.46
TraesCS4B01G188100.1	Wheat	golgi, mitochondrion	70.55	71.18
TraesCS4A01G116100.2	Wheat	golgi, mitochondrion	70.55	71.02
KRH12052	Soybean	mitochondrion	41.54	70.79
TraesCS4D01G189500.1	Wheat	golgi, mitochondrion	70.11	70.73
TraesCS1B01G115300.1	Wheat	golgi, mitochondrion	69.89	68.09
Zm00001d035801_P001	Maize	mitochondrion, nucleus, plastid	26.37	62.18
CDY11441	Canola	mitochondrion	25.71	61.9
Solyc01g067930.2.1	Tomato	mitochondrion	26.81	58.1
CDY11442	Canola	cytosol, extracellular, mitochondrion, plastid	10.55	56.47
KRH56886	Soybean	endoplasmic reticulum	54.51	55.48
KRH03516	Soybean	mitochondrion	54.29	55.26
KRH58138	Soybean	golgi	33.63	35.75
KRH77153	Soybean	golgi, nucleus, peroxisome, plastid	34.51	34.97
KRH28334	Soybean	plastid	34.51	34.73

Protein Annotations

EntrezGene:100794266	MapMan:21.2.1.1.2	Gene3D:3.90.550.10	EMBL:ACUP02012155	EnsemblPlantsGene:GLYMA_19G210200	GO:GO:0003674
GO:GO:0003824	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005768
GO:GO:0005794	GO:GO:0005802	GO:GO:0005975	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009969	GO:GO:0009987	GO:GO:0016020	GO:GO:0016021	GO:GO:0016740	GO:GO:0016757
GO:GO:0016758	GO:GO:0033843	GO:GO:0035252	InterPro:Glyco_trans_34	UniProt:I1NB50	InterPro:IPR029044
EnsemblPlants:KRG96428	ProteinID:KRG96428	ProteinID:KRG96428.1	InterPro:Nucleotide-diphossugar_trans	PFAM:PF05637	PANTHER:PTHR31311
PANTHER:PTHR31311:SF6	TMHMM:TMhelix	UniParc:UPI000233E1A3	SEG:seg	:	:

Description

hypothetical protein

Coordinates

chr19:-:46439035..46440402

Molecular Weight (calculated)

52844.5 Da

IEP (calculated)

7.991

GRAVY (calculated)

-0.453

Length

455 amino acids

Sequence
(BLAST)

001: MLEKCLGAQR ARRFHRALRH CKVTILCLVL TIVVLRGTIG AGKFGTPEQD LVDIRNRFYT RKLPEPHRLL AELHSTTTPF ESSTSTTNYN AFDINTILVD
101: ETEDENREKV NPHEAYRLGP KISIWDEQRS RWLRENPNFS NFLRPNKPRV LLVTGSSPKP CENPVGDHYL LKAIKNKIDY CRLHGIEVFY NMALLDAEMA
201: GFWAKLPLIR KLLLSHPEVE FLWWMDSDAM FTDMKFAVPW ERYKDSNLVM HGWNEMVYDD KNWIGLNTGS FLLRNCQWSL DILDAWAPMG PKGKVRDEAG
301: KVLTRELKDR PVFEADDQSA MVYLLAKERE KWGGKVYLEN GYYLHGYWGI LVDRYEEMIE NYHPGFGDHR WPLVTHFVGC KPCGKFGDYP VERCLKQMDR
401: AFNFGDNQIL HIYGFTHKSL GSRGVKRIRN ETSNPLEVKD ELGLLHPAFK AVEVS

Best Arabidopsis Sequence Match ( AT4G02500.1 )
(BLAST)

001: MIERCLGAYR CRRIQRALRQ LKVTILCLLL TVVVLRSTIG AGKFGTPEQD LDEIRQHFHA RKRGEPHRVL EEIQTGGDSS SGDGGGNSGG SNNYETFDIN
101: KIFVDEGEEE KPDPNKPYTL GPKISDWDEQ RSDWLAKNPS FPNFIGPNKP RVLLVTGSAP KPCENPVGDH YLLKSIKNKI DYCRLHGIEI FYNMALLDAE
201: MAGFWAKLPL IRKLLLSHPE IEFLWWMDSD AMFTDMAFEL PWERYKDYNL VMHGWNEMVY DQKNWIGLNT GSFLLRNNQW ALDLLDTWAP MGPKGKIREE
301: AGKVLTRELK DRPVFEADDQ SAMVYLLATQ RDAWGNKVYL ESGYYLHGYW GILVDRYEEM IENYHPGLGD HRWPLVTHFV GCKPCGKFGD YPVERCLKQM
401: DRAFNFGDNQ ILQIYGFTHK SLASRKVKRV RNETSNPLEM KDELGLLHPA FKAVKVQTNQ V

Arabidopsis Description

XXT2Xyloglucan 6-xylosyltransferase 2 [Source:UniProtKB/Swiss-Prot;Acc:O22775]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.