CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 2
cytosol 1
mitochondrion 4

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX68187	golgi
CDX73082	golgi
CDX85826	golgi
CDX90935	golgi
CDX96540	golgi
CDX97271	golgi
CDY18017	golgi
CDY22055	golgi
CDY49114	golgi
CDY50378	golgi
CDY65940	golgi
CDY70090	golgi

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G62720.1	CDX68187	AT1G74380.1	22665445
AT3G62720.1	CDX73082	AT1G74380.1	22665445
AT3G62720.1	CDX85826	AT1G74380.1	22665445
AT3G62720.1	CDX96540	AT1G74380.1	22665445
AT3G62720.1	CDY49114	AT1G74380.1	22665445
AT3G62720.1	CDX90935	AT4G02500.1	22665445
AT3G62720.1	CDX97271	AT4G02500.1	22665445
AT3G62720.1	CDY18017	AT4G02500.1	22665445
AT3G62720.1	CDY22055	AT4G02500.1	22665445
AT3G62720.1	CDY50378	AT4G02500.1	22665445
AT3G62720.1	CDY65940	AT4G02500.1	22665445
AT3G62720.1	CDY70090	AT4G02500.1	22665445

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY11443	Canola	cytosol	30.21	98.31
Zm00001d026023_P001	Maize	endoplasmic reticulum, golgi	64.58	46.79
CDY18017	Canola	mitochondrion	69.27	39.7
Os03t0300000-01	Rice	cytosol	66.15	36.49
CDX73082	Canola	cytosol	42.19	36.49
CDX96540	Canola	cytosol	42.19	36.49
Bra007696.1-P	Field mustard	mitochondrion	86.46	36.4
CDX68187	Canola	cytosol	42.19	36.32
CDX85826	Canola	cytosol	42.19	36.32
AT3G62720.1	Thale cress	mitochondrion	84.9	35.43
Zm00001d025851_P001	Maize	cytosol	65.62	34.81
CDX93965	Canola	mitochondrion	82.29	34.5
CDY70418	Canola	golgi, mitochondrion	80.21	33.48
Zm00001d051264_P001	Maize	mitochondrion, plastid	65.1	31.49
GSMUA_Achr1P24760_001	Banana	mitochondrion	70.83	31.48
CDY22055	Canola	mitochondrion	72.92	31.18
KRH37112	Soybean	golgi, mitochondrion	72.92	31.11
GSMUA_Achr8P22410_001	Banana	golgi, mitochondrion	69.27	31.0
KRG96428	Soybean	mitochondrion	72.92	30.77
VIT_07s0005g00150.t01	Wine grape	mitochondrion	72.4	30.75
CDX90935	Canola	mitochondrion	71.88	30.73
Zm00001d028811_P001	Maize	plasma membrane	70.31	30.2
CDY50378	Canola	cytosol	73.44	30.06
EER92398	Sorghum	golgi	69.79	30.04
Zm00001d047694_P001	Maize	golgi	69.79	29.91
VIT_05s0020g01530.t01	Wine grape	mitochondrion	70.83	29.18
TraesCS4D01G189500.1	Wheat	golgi, mitochondrion	67.71	28.82
TraesCS4B01G188100.1	Wheat	golgi, mitochondrion	67.71	28.82
HORVU4Hr1G054910.1	Barley	golgi, mitochondrion	67.19	28.54
TraesCS4A01G116100.2	Wheat	golgi, mitochondrion	67.19	28.54
TraesCS1B01G115300.1	Wheat	golgi, mitochondrion	67.71	27.84
PGSC0003DMT400058812	Potato	mitochondrion	67.19	27.8
CDY65940	Canola	mitochondrion	33.85	24.44
CDX97271	Canola	mitochondrion	33.85	24.16
CDY49114	Canola	peroxisome	16.67	22.86
Zm00001d035801_P001	Maize	mitochondrion, nucleus, plastid	20.31	20.21
CDY11442	Canola	cytosol, extracellular, mitochondrion, plastid	8.33	18.82
CDX99024	Canola	cytosol, golgi, peroxisome, plastid	43.75	18.5
CDY19235	Canola	cytosol, golgi, plasma membrane, plastid	43.23	18.36
CDY26738	Canola	golgi, mitochondrion, plasma membrane, plastid	45.31	18.05
CDX69995	Canola	cytosol	42.71	18.02
CDY70090	Canola	mitochondrion	28.65	15.54
CDY29577	Canola	golgi	25.0	10.96
CDX72649	Canola	golgi	25.0	10.96
CDY49440	Canola	golgi	25.52	10.94
CDX76887	Canola	golgi, plastid	25.52	10.94
CDY11441	Canola	mitochondrion	8.85	8.99
KRH68171	Soybean	golgi, mitochondrion	9.38	7.47
KRH12052	Soybean	mitochondrion	9.9	7.12
Solyc01g067930.2.1	Tomato	mitochondrion	4.69	4.29

Protein Annotations

EnsemblPlants:CDX76657	EnsemblPlantsGene:GSBRNA2T00127130001	GO:A0A078CIS6	GO:GO:0003674	GO:GO:0003824	GO:GO:0005575
GO:GO:0016020	GO:GO:0016021	GO:GO:0016740	GO:GO:0016757	InterPro:Glyco_trans_34	PANTHER:PTHR31311
PANTHER:PTHR31311:SF6	PFAM:PF05637	ProteinID:CDX76657	ProteinID:CDX76657.1	UniParc:UPI0004EEE99B	MapMan:35.1

Description

BnaC08g32430D

Coordinates

chrLK031808:+:364800..366170

Molecular Weight (calculated)

22081.7 Da

IEP (calculated)

10.025

GRAVY (calculated)

-0.542

Length

192 amino acids

Sequence
(BLAST)

001: MIEKCLGTNR WFTTRRIGLG LIPEVSCLGT RNGPLIYSTL GLQWARKGKS GQKRSAMVYL LATEREKWGG KVYLESGYYL HGYWGILVDR YEEMIENHKP
101: GFGDHRWPLV THFVGCKPCG KFGDYPVERC LRQMDRAFNF GDNQILQMYG FTHKSLGSRR VKPTRNQTDR PLDAKDEFGL LHPSFKAAKL TT

Best Arabidopsis Sequence Match ( AT1G18690.1 )
(BLAST)

001: MFQDGSRSSG SGRGLSTTAV SNGGWRTRGF LRGWQIQNTL FNNIKFMILC CFVTILILLG TIRVGNLGSS NADSVNQSFI KETIPILAEI PSDSHSTDLA
101: EPPKADVSPN ATYTLEPRIA EIPSDVHSTD LVELPKADIS PNATYTLGPR IAEIPSDSHL TDLLEPPKAD ISPNATYTLG PKITNWDSQR KVWLNQNPEF
201: PNIVNGKARI LLLTGSSPGP CDKPIGNYYL LKAVKNKIDY CRLHGIEIVY NMANLDEELS GYWTKLPMIR TLMLSHPEVE WIWWMDSDAL FTDILFEIPL
301: PRYENHNLVI HGYPDLLFNQ KSWVALNTGI FLLRNCQWSL DLLDAWAPMG PKGKIRDETG KILTAYLKGR PAFEADDQSA LIYLLLSQKE KWIEKVYVEN
401: QYYLHGFWEG LVDRYEEMIE KYHPGLGDER WPFVTHFVGC KPCGSYADYA VDRCFKSMER AFNFADNQVL KLYGFSHRGL LSPKIKRIRN ETVSPLESVD
501: KFDIRRMHME TKP

Arabidopsis Description

XXT4Xyloglucan 6-xylosyltransferase 4 [Source:UniProtKB/Swiss-Prot;Acc:Q9M9U0]
SUBAcon: [golgi,plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.