CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 1
mitochondrion 5
golgi 1
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX68187	golgi
CDX73082	golgi
CDX85826	golgi
CDX90935	golgi
CDX96540	golgi
CDX97271	golgi
CDY18017	golgi
CDY22055	golgi
CDY49114	golgi
CDY50378	golgi
CDY65940	golgi
CDY70090	golgi

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G02500.1	CDX68187	AT1G74380.1	22665445
AT4G02500.1	CDX73082	AT1G74380.1	22665445
AT4G02500.1	CDX85826	AT1G74380.1	22665445
AT4G02500.1	CDX96540	AT1G74380.1	22665445
AT4G02500.1	CDY49114	AT1G74380.1	22665445
AT4G02500.1	CDX90935	AT4G02500.1	22665445
AT4G02500.1	CDX97271	AT4G02500.1	22665445
AT4G02500.1	CDY18017	AT4G02500.1	22665445
AT4G02500.1	CDY22055	AT4G02500.1	22665445
AT4G02500.1	CDY50378	AT4G02500.1	22665445
AT4G02500.1	CDY65940	AT4G02500.1	22665445
AT4G02500.1	CDY70090	AT4G02500.1	22665445

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX97271	Canola	mitochondrion	91.73	90.71
CDY70090	Canola	mitochondrion	89.85	67.51
CDY18017	Canola	mitochondrion	84.59	67.16
Bra018545.1-P	Field mustard	mitochondrion	94.36	54.33
CDY11442	Canola	cytosol, extracellular, mitochondrion, plastid	16.92	52.94
CDY22055	Canola	mitochondrion	87.97	52.12
CDX90935	Canola	mitochondrion	86.09	51.0
AT4G02500.1	Thale cress	mitochondrion	87.97	50.76
CDY49114	Canola	peroxisome	26.69	50.71
CDY50378	Canola	cytosol	84.21	47.76
VIT_07s0005g00150.t01	Wine grape	mitochondrion	76.69	45.13
Zm00001d026023_P001	Maize	endoplasmic reticulum, golgi	44.36	44.53
KRH37112	Soybean	golgi, mitochondrion	72.93	43.11
CDY70418	Canola	golgi, mitochondrion	72.93	42.17
KRG96428	Soybean	mitochondrion	71.8	41.98
VIT_05s0020g01530.t01	Wine grape	mitochondrion	73.31	41.85
CDX93965	Canola	mitochondrion	71.8	41.7
CDY11441	Canola	mitochondrion	29.32	41.27
PGSC0003DMT400058812	Potato	mitochondrion	71.43	40.95
Zm00001d035801_P001	Maize	mitochondrion, nucleus, plastid	29.32	40.41
KRH12052	Soybean	mitochondrion	39.85	39.7
GSMUA_Achr1P24760_001	Banana	mitochondrion	63.16	38.89
EER92398	Sorghum	golgi	64.66	38.56
Zm00001d047694_P001	Maize	golgi	64.66	38.39
Zm00001d028811_P001	Maize	plasma membrane	64.29	38.26
CDX68187	Canola	cytosol	31.2	37.22
CDX85826	Canola	cytosol	31.2	37.22
CDX73082	Canola	cytosol	30.83	36.94
CDX96540	Canola	cytosol	30.83	36.94
TraesCS4D01G189500.1	Wheat	golgi, mitochondrion	62.41	36.81
HORVU4Hr1G054910.1	Barley	golgi, mitochondrion	62.41	36.73
TraesCS4A01G116100.2	Wheat	golgi, mitochondrion	62.41	36.73
TraesCS4B01G188100.1	Wheat	golgi, mitochondrion	62.03	36.59
Os03t0300000-01	Rice	cytosol	46.99	35.92
TraesCS1B01G115300.1	Wheat	golgi, mitochondrion	62.41	35.55
GSMUA_Achr8P22410_001	Banana	golgi, mitochondrion	57.14	35.43
CDX76657	Canola	mitochondrion	24.44	33.85
Zm00001d051264_P001	Maize	mitochondrion, plastid	50.0	33.5
Zm00001d025851_P001	Maize	cytosol	45.49	33.43
Solyc01g067930.2.1	Tomato	mitochondrion	25.19	31.9
KRH68171	Soybean	golgi, mitochondrion	27.44	30.29
CDX99024	Canola	cytosol, golgi, peroxisome, plastid	45.86	26.87
CDX69995	Canola	cytosol	45.86	26.81
CDY19235	Canola	cytosol, golgi, plasma membrane, plastid	41.35	24.34
CDY26738	Canola	golgi, mitochondrion, plasma membrane, plastid	42.86	23.65
CDY49440	Canola	golgi	26.32	15.62
CDX76887	Canola	golgi, plastid	25.94	15.4
CDY29577	Canola	golgi	25.19	15.3
CDX72649	Canola	golgi	25.19	15.3
CDY11443	Canola	cytosol	0.0	0.0

Protein Annotations

EnsemblPlants:CDY65940	EnsemblPlantsGene:GSBRNA2T00051043001	GO:A0A078JHG1	GO:GO:0003674	GO:GO:0003824	GO:GO:0005575
GO:GO:0016020	GO:GO:0016021	GO:GO:0016740	GO:GO:0016757	InterPro:Glyco_trans_34	PANTHER:PTHR31311
PANTHER:PTHR31311:SF6	PFAM:PF05637	ProteinID:CDY65940	ProteinID:CDY65940.1	SEG:seg	TMHMM:TMhelix
UniParc:UPI0004EF4786	UniProt:A0A078JHG1	MapMan:35.1	:	:	:

Description

BnaUnng01300DBnaUnng01300D protein [Source:UniProtKB/TrEMBL;Acc:A0A078JHG1]

Coordinates

chrLK035013:-:6357..7952

Molecular Weight (calculated)

30424.2 Da

IEP (calculated)

5.433

GRAVY (calculated)

-0.524

Length

266 amino acids

Sequence
(BLAST)

001: MMERCLGANR CRRIQRALRH LKVTVMCLVL TVVVLRCTIG AGKFGTPEQD LDEIRQHIYT SRKRAEPHRV LEEIQTGGDS SSSSSSSGGG SNNYETFDIN
101: KIFVDEGEEE KPDPNKPDAM FTDMAFELPW ERYKEYNLVM HGWNEMVYDE KNWIGLNTGS FLLRNNQWAL DLLDTWAPMG PKGKIREEAG KVLTRELKGR
201: PVFEADDQSA MVYLLATQRA TWGNKVYLEN GYYLHGYWGI LVDKYEEMIE NYHPGLVWGL PGGTVS

Best Arabidopsis Sequence Match ( AT1G74380.1 )
(BLAST)

001: MGQDGSPAHK RPSGSGGGLP TTTLTNGGGR GGRGGLLPRG RQMQKTFNNI KITILCGFVT ILVLRGTIGV GNLGSSSADA VNQNIIEETN RILAEIRSDS
101: DPTDLDEPQE GDMNPNATYV LGPKITDWDS QRKVWLNQNP EFPSTVNGKA RILLLTGSPP KPCDNPIGDH YLLKSVKNKI DYCRLHGIEI VYNMAHLDKE
201: LAGYWAKLPM IRRLMLSHPE VEWIWWMDSD ALFTDILFQI PLARYQKHNL VIHGYPDLLF DQKSWIALNT GSFLLRNCQW SLDLLDAWAP MGPKGPIRDE
301: AGKVLTAYLK GRPAFEADDQ SALIYLLLSQ KDTWMEKVFV ENQYYLHGFW EGLVDRYEEM IEKYHPGLGD ERWPFVTHFV GCKPCGSYAD YAVERCLKSM
401: ERAFNFADNQ VLKLYGFSHR GLLSPKIKRI RNETVSPLEF VDKFDIRRTP VETKPQN

Arabidopsis Description

XXT5Probable xyloglucan 6-xylosyltransferase 5 [Source:UniProtKB/Swiss-Prot;Acc:Q9CA75]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.