CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, golgi

Predictor Summary:

plastid 1
mitochondrion 4
golgi 2
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
KRG96428	golgi, golgi
KRH03516	golgi, golgi
KRH12052	golgi, golgi
KRH37112	golgi, golgi
KRH56886	golgi, golgi
KRH68171	golgi, golgi

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G62720.1	KRH03516	AT1G74380.1	22665445
AT3G62720.1	KRH56886	AT1G74380.1	22665445
AT3G62720.1	KRG96428	AT4G02500.1	22665445
AT3G62720.1	KRH12052	AT4G02500.1	22665445
AT3G62720.1	KRH37112	AT4G02500.1	22665445
AT3G62720.1	KRH68171	AT4G02500.1	22665445
AT4G02500.1	KRH03516	AT1G74380.1	22665445
AT4G02500.1	KRH56886	AT1G74380.1	22665445
AT4G02500.1	KRG96428	AT4G02500.1	22665445
AT4G02500.1	KRH12052	AT4G02500.1	22665445
AT4G02500.1	KRH37112	AT4G02500.1	22665445
AT4G02500.1	KRH68171	AT4G02500.1	22665445

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH12052	Soybean	mitochondrion	55.56	93.63
Zm00001d026023_P001	Maize	endoplasmic reticulum, golgi	50.22	85.28
Os03t0300000-01	Rice	cytosol	64.89	83.91
CDY22055	Canola	mitochondrion	81.78	81.96
CDX90935	Canola	mitochondrion	81.33	81.51
Bra036262.1-P	Field mustard	mitochondrion	83.56	81.39
Bra018545.1-P	Field mustard	mitochondrion	82.89	80.74
AT4G02500.1	Thale cress	mitochondrion	82.44	80.48
Bra000877.1-P	Field mustard	mitochondrion	82.44	80.13
VIT_05s0020g01530.t01	Wine grape	mitochondrion	82.67	79.83
KRG96428	Soybean	mitochondrion	80.67	79.78
CDY70090	Canola	mitochondrion	62.0	78.81
CDY18017	Canola	mitochondrion	58.44	78.51
GSMUA_Achr1P24760_001	Banana	mitochondrion	75.33	78.47
Bra007696.1-P	Field mustard	mitochondrion	78.22	77.19
PGSC0003DMT400058812	Potato	mitochondrion	79.56	77.16
CDY50378	Canola	cytosol	80.22	76.97
AT3G62720.1	Thale cress	mitochondrion	78.22	76.52
CDY11443	Canola	cytosol	10.0	76.27
Zm00001d025851_P001	Maize	cytosol	61.33	76.24
GSMUA_Achr8P22410_001	Banana	golgi, mitochondrion	72.22	75.76
Bra014396.1-P	Field mustard	mitochondrion	76.67	75.16
CDX97271	Canola	mitochondrion	44.89	75.09
Zm00001d051264_P001	Maize	mitochondrion, plastid	66.0	74.81
CDY70418	Canola	golgi, mitochondrion	76.44	74.78
CDX93965	Canola	mitochondrion	76.0	74.67
Zm00001d028811_P001	Maize	plasma membrane	74.0	74.5
EER92398	Sorghum	golgi	73.56	74.22
Zm00001d047694_P001	Maize	golgi	73.78	74.11
CDY65940	Canola	mitochondrion	43.11	72.93
CDX76657	Canola	mitochondrion	31.11	72.92
TraesCS4A01G116100.2	Wheat	golgi, mitochondrion	71.33	71.02
HORVU4Hr1G054910.1	Barley	golgi, mitochondrion	71.33	71.02
TraesCS4D01G189500.1	Wheat	golgi, mitochondrion	71.11	70.95
TraesCS4B01G188100.1	Wheat	golgi, mitochondrion	71.11	70.95
TraesCS1B01G115300.1	Wheat	golgi, mitochondrion	71.33	68.74
KRH68171	Soybean	golgi, mitochondrion	36.44	68.05
Zm00001d035801_P001	Maize	mitochondrion, nucleus, plastid	27.33	63.73
CDY11441	Canola	mitochondrion	26.67	63.49
Solyc01g067930.2.1	Tomato	mitochondrion	29.33	62.86
CDY11442	Canola	cytosol, extracellular, mitochondrion, plastid	10.67	56.47
KRH03516	Soybean	mitochondrion	56.0	56.38
KRH56886	Soybean	endoplasmic reticulum	55.78	56.15
KRH58138	Soybean	golgi	34.0	35.75
KRH77153	Soybean	golgi, nucleus, peroxisome, plastid	34.44	34.52
KRH28334	Soybean	plastid	34.22	34.07

Protein Annotations

EntrezGene:100813899	MapMan:21.2.1.1.2	Gene3D:3.90.550.10	EMBL:ACUP02005414	EnsemblPlantsGene:GLYMA_09G044800	GO:GO:0003674
GO:GO:0003824	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005768
GO:GO:0005794	GO:GO:0005802	GO:GO:0005975	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009969	GO:GO:0009987	GO:GO:0016020	GO:GO:0016021	GO:GO:0016740	GO:GO:0016757
GO:GO:0016758	GO:GO:0033843	GO:GO:0035252	InterPro:Glyco_trans_34	UniProt:I1L100	InterPro:IPR029044
ProteinID:KRH37111.1	EnsemblPlants:KRH37112	ProteinID:KRH37112	ProteinID:KRH37112.1	InterPro:Nucleotide-diphossugar_trans	PFAM:PF05637
PANTHER:PTHR31311	PANTHER:PTHR31311:SF6	TMHMM:TMhelix	UniParc:UPI000233914F	SEG:seg	:

Description

hypothetical protein

Coordinates

chr9:-:3839997..3842543

Molecular Weight (calculated)

51848.0 Da

IEP (calculated)

7.198

GRAVY (calculated)

-0.464

Length

450 amino acids

Sequence
(BLAST)

001: MLECCLGTRR VRQIHRACRH STVTFLCLFL TLVVLRGTIG AGKFGTPEQD FNEIRHHLSA ARARRVLEEV KPESLSSSES NNYATFDLSK ILVDEPPTDD
101: EKPNPNAPYT LGPKISNWDE QRSSWLSNNP DYPNFIGPNK PRVLLVTGSS PKPCENPVGD HYLVKSIKNK IDYCRVHGIE IFYNMALLDA EMAGFWAKLP
201: LIRKLLLSHP EVEFLWWMDS DAMFTDMAFE VPWERYKDSN FVMHGWNEMV YDEKNWIGLN TGSFLLRNCQ WSLDILDAWA PMGPKGKIRD EAGKVLTREL
301: KNRPVFEADD QSAMVYLLAT GKEKWGDKVY LENHYYLHGY WGILVDRYEE MIENYHPGLG DHRWPLVTHF VGCKPCGKFG DYPVERCLKQ MDRAYNFGDN
401: QILQMYGFTH KSLGSRKVKR VRNDTSNPLE VKDELGLLHP AFKAIKLSSS

Best Arabidopsis Sequence Match ( AT4G02500.1 )
(BLAST)

001: MIERCLGAYR CRRIQRALRQ LKVTILCLLL TVVVLRSTIG AGKFGTPEQD LDEIRQHFHA RKRGEPHRVL EEIQTGGDSS SGDGGGNSGG SNNYETFDIN
101: KIFVDEGEEE KPDPNKPYTL GPKISDWDEQ RSDWLAKNPS FPNFIGPNKP RVLLVTGSAP KPCENPVGDH YLLKSIKNKI DYCRLHGIEI FYNMALLDAE
201: MAGFWAKLPL IRKLLLSHPE IEFLWWMDSD AMFTDMAFEL PWERYKDYNL VMHGWNEMVY DQKNWIGLNT GSFLLRNNQW ALDLLDTWAP MGPKGKIREE
301: AGKVLTRELK DRPVFEADDQ SAMVYLLATQ RDAWGNKVYL ESGYYLHGYW GILVDRYEEM IENYHPGLGD HRWPLVTHFV GCKPCGKFGD YPVERCLKQM
401: DRAFNFGDNQ ILQIYGFTHK SLASRKVKRV RNETSNPLEM KDELGLLHPA FKAVKVQTNQ V

Arabidopsis Description

XXT2Xyloglucan 6-xylosyltransferase 2 [Source:UniProtKB/Swiss-Prot;Acc:O22775]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.