CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 1
mitochondrion 5
golgi 2

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX68187	golgi
CDX73082	golgi
CDX85826	golgi
CDX90935	golgi
CDX96540	golgi
CDX97271	golgi
CDY18017	golgi
CDY22055	golgi
CDY49114	golgi
CDY50378	golgi
CDY65940	golgi
CDY70090	golgi

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G02500.1	CDX68187	AT1G74380.1	22665445
AT4G02500.1	CDX73082	AT1G74380.1	22665445
AT4G02500.1	CDX85826	AT1G74380.1	22665445
AT4G02500.1	CDX96540	AT1G74380.1	22665445
AT4G02500.1	CDY49114	AT1G74380.1	22665445
AT4G02500.1	CDX90935	AT4G02500.1	22665445
AT4G02500.1	CDX97271	AT4G02500.1	22665445
AT4G02500.1	CDY18017	AT4G02500.1	22665445
AT4G02500.1	CDY22055	AT4G02500.1	22665445
AT4G02500.1	CDY50378	AT4G02500.1	22665445
AT4G02500.1	CDY65940	AT4G02500.1	22665445
AT4G02500.1	CDY70090	AT4G02500.1	22665445

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY65940	Canola	mitochondrion	67.51	89.85
CDX97271	Canola	mitochondrion	66.67	87.73
KRH12052	Soybean	mitochondrion	58.47	77.53
Bra018545.1-P	Field mustard	mitochondrion	97.46	74.68
CDY22055	Canola	mitochondrion	91.81	72.38
CDX90935	Canola	mitochondrion	91.53	72.16
CDY11441	Canola	mitochondrion	38.42	71.96
AT4G02500.1	Thale cress	mitochondrion	93.22	71.58
KRH68171	Soybean	golgi, mitochondrion	47.18	69.29
CDY50378	Canola	cytosol	89.55	67.59
Solyc01g067930.2.1	Tomato	mitochondrion	39.27	66.19
VIT_07s0005g00150.t01	Wine grape	mitochondrion	82.49	64.6
CDY18017	Canola	mitochondrion	59.89	63.28
KRH37112	Soybean	golgi, mitochondrion	78.81	62.0
VIT_05s0020g01530.t01	Wine grape	mitochondrion	81.36	61.8
CDY70418	Canola	golgi, mitochondrion	79.38	61.09
CDX93965	Canola	mitochondrion	78.81	60.92
CDY49114	Canola	peroxisome	24.01	60.71
Zm00001d035801_P001	Maize	mitochondrion, nucleus, plastid	32.77	60.1
KRG96428	Soybean	mitochondrion	76.84	59.78
PGSC0003DMT400058812	Potato	mitochondrion	77.4	59.05
GSMUA_Achr1P24760_001	Banana	mitochondrion	70.34	57.64
Os03t0300000-01	Rice	cytosol	56.5	57.47
EER92398	Sorghum	golgi	69.49	55.16
Zm00001d047694_P001	Maize	golgi	69.77	55.13
Zm00001d028811_P001	Maize	plasma membrane	69.49	55.03
GSMUA_Achr8P22410_001	Banana	golgi, mitochondrion	65.54	54.08
TraesCS4D01G189500.1	Wheat	golgi, mitochondrion	67.8	53.22
TraesCS4A01G116100.2	Wheat	golgi, mitochondrion	67.8	53.1
HORVU4Hr1G054910.1	Barley	golgi, mitochondrion	67.8	53.1
TraesCS4B01G188100.1	Wheat	golgi, mitochondrion	67.51	52.99
Zm00001d051264_P001	Maize	mitochondrion, plastid	58.19	51.89
CDY11442	Canola	cytosol, extracellular, mitochondrion, plastid	12.43	51.76
TraesCS1B01G115300.1	Wheat	golgi, mitochondrion	67.8	51.39
Zm00001d025851_P001	Maize	cytosol	52.26	51.1
Zm00001d026023_P001	Maize	endoplasmic reticulum, golgi	38.14	50.94
CDX99024	Canola	cytosol, golgi, peroxisome, plastid	53.67	41.85
CDX69995	Canola	cytosol	53.67	41.76
CDX73082	Canola	cytosol	25.14	40.09
CDX96540	Canola	cytosol	25.14	40.09
CDX68187	Canola	cytosol	25.14	39.91
CDX85826	Canola	cytosol	25.14	39.91
CDY19235	Canola	cytosol, golgi, plasma membrane, plastid	47.46	37.17
CDY26738	Canola	golgi, mitochondrion, plasma membrane, plastid	48.02	35.27
CDX76657	Canola	mitochondrion	15.54	28.65
CDY49440	Canola	golgi	33.9	26.79
CDY29577	Canola	golgi	32.77	26.48
CDX72649	Canola	golgi	32.77	26.48
CDX76887	Canola	golgi, plastid	33.33	26.34
CDY11443	Canola	cytosol	0.0	0.0

Protein Annotations

MapMan:21.2.1.1.2	Gene3D:3.90.550.10	GO:A0A078JUF9	UniProt:A0A078JUF9	EnsemblPlants:CDY70090	ProteinID:CDY70090
ProteinID:CDY70090.1	GO:GO:0003674	GO:GO:0003824	GO:GO:0005575	GO:GO:0016020	GO:GO:0016021
GO:GO:0016740	GO:GO:0016757	EnsemblPlantsGene:GSBRNA2T00096293001	InterPro:Glyco_trans_34	InterPro:IPR029044	InterPro:Nucleotide-diphossugar_trans
PFAM:PF05637	PANTHER:PTHR31311	PANTHER:PTHR31311:SF6	TMHMM:TMhelix	UniParc:UPI0004EE0929	SEG:seg

Description

BnaCnng66640DBnaCnng66640D protein (Fragment) [Source:UniProtKB/TrEMBL;Acc:A0A078JUF9]

Coordinates

chrLK041114:-:2..1603

Molecular Weight (calculated)

40776.9 Da

IEP (calculated)

6.322

GRAVY (calculated)

-0.444

Length

354 amino acids

Sequence
(BLAST)

001: MMERCLGANR CRRIQRALRH LKVTVMCLVL TVVVLRCTIG AGKFGTPEQD LDEIRQHIYT SRKRVEPHRV LEEIQTGGDS SSSSSSSGGG SNNYETFDIN
101: KIFVDEGEEE KPDPNKPYTL GPKISDWDEQ RSDWLAKNPT FPNFIGPNKP RVLLVTGSAP KPCENPVGDH YLLKSIKNKI DYCRLHGIEI FYNMALLDAE
201: MAGFWAKLPL IRKLLLSHPE IEFLWWMDSD AMFTDMAFEL PWERYKDYNL VMHGWNEMVY DEKNWIGLNT GSFLLRNNQW ALDLLDTWAP MGPKGKIREE
301: AGKVLTRELK GRPVFEADDQ SAMVYLLATQ RDTWGNKVYL ENGYYLHGYW GILV

Best Arabidopsis Sequence Match ( AT1G74380.1 )
(BLAST)

001: MGQDGSPAHK RPSGSGGGLP TTTLTNGGGR GGRGGLLPRG RQMQKTFNNI KITILCGFVT ILVLRGTIGV GNLGSSSADA VNQNIIEETN RILAEIRSDS
101: DPTDLDEPQE GDMNPNATYV LGPKITDWDS QRKVWLNQNP EFPSTVNGKA RILLLTGSPP KPCDNPIGDH YLLKSVKNKI DYCRLHGIEI VYNMAHLDKE
201: LAGYWAKLPM IRRLMLSHPE VEWIWWMDSD ALFTDILFQI PLARYQKHNL VIHGYPDLLF DQKSWIALNT GSFLLRNCQW SLDLLDAWAP MGPKGPIRDE
301: AGKVLTAYLK GRPAFEADDQ SALIYLLLSQ KDTWMEKVFV ENQYYLHGFW EGLVDRYEEM IEKYHPGLGD ERWPFVTHFV GCKPCGSYAD YAVERCLKSM
401: ERAFNFADNQ VLKLYGFSHR GLLSPKIKRI RNETVSPLEF VDKFDIRRTP VETKPQN

Arabidopsis Description

XXT5Probable xyloglucan 6-xylosyltransferase 5 [Source:UniProtKB/Swiss-Prot;Acc:Q9CA75]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.