CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, golgi

Predictor Summary:

nucleus 1
mitochondrion 4
golgi 2
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d039763_P001	Maize	golgi, mitochondrion	88.52	89.31
TraesCS4A01G120300.1	Wheat	golgi	73.29	76.67
Os03t0306100-00	Rice	golgi	74.61	75.28
HORVU4Hr1G054020.3	Barley	golgi	71.96	74.94
TraesCS4D01G185800.1	Wheat	mitochondrion	72.85	71.58
EER92376	Sorghum	golgi	60.49	61.44
EER92377	Sorghum	golgi	58.28	59.19
EER92398	Sorghum	golgi	47.02	47.76
EES16639	Sorghum	golgi	46.58	45.38
EES06903	Sorghum	plastid	45.7	43.12
EES15672	Sorghum	mitochondrion	43.27	38.06
EES07343	Sorghum	golgi	35.54	36.34
EES08636	Sorghum	plastid	35.76	36.08
OQU83610	Sorghum	cytosol, golgi, peroxisome, plastid	37.53	35.49
OQU83607	Sorghum	plastid	34.88	34.27

Protein Annotations

MapMan:21.2.1.1.2	Gene3D:3.90.550.10	EntrezGene:8075110	UniProt:C5XP57	EnsemblPlants:EES00270	ProteinID:EES00270
ProteinID:EES00270.1	GO:GO:0003674	GO:GO:0003824	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0005768	GO:GO:0005794	GO:GO:0005802	GO:GO:0005975	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009969	GO:GO:0009987	GO:GO:0016020	GO:GO:0016021
GO:GO:0016740	GO:GO:0016757	GO:GO:0016758	GO:GO:0033843	GO:GO:0035252	InterPro:Glyco_trans_34
InterPro:IPR029044	InterPro:Nucleotide-diphossugar_trans	PFAM:PF05637	PANTHER:PTHR31311	PANTHER:PTHR31311:SF9	EnsemblPlantsGene:SORBI_3003G059600
TMHMM:TMhelix	UniParc:UPI0001A8468D	RefSeq:XP_002455150.1	SEG:seg	:	:

Description

hypothetical protein

Coordinates

chr3:+:5255927..5258211

Molecular Weight (calculated)

50730.1 Da

IEP (calculated)

6.790

GRAVY (calculated)

-0.301

Length

453 amino acids

Sequence
(BLAST)

001: MREQYSYSSK PAGIRRHYRR CAPAAAHIAV AFLLVALGVL YLIFGPTNSD LNLVLAMPRV HVVFNNKPAV VPAAPAAAAP SLGSNATDDD VDSGLPPPRQ
101: LTDPPYSLGR VILDYDARRS AWLAAHPEFQ PAAAGRPRPR VLVVTGSAPA RCPDPDGDHL LLRAFKNKAD YCRVHGLDVF YNAAFLDAEM SGFWAKLPLL
201: RALMLAHPEV ELLWWVDSDA VFTDMAFEPP WGRYERHNLV LHGWSAKVFE ERSWVGVNTG SFLIRNCQWS LDLLDAWAPM GSRGPVRDSY GELFARELTG
301: RPPFEADDQS ALVYLLVTQR SRWGDKTFIE SAYELNGFWE GIVDRYEELR RKGRPAGGLG DGDDRWPFVT HFVGCKPCRR YADSYPADRC RRGMERAFNF
401: ADDQIMRLYG FQHESLNTTA VQRVGNETGG PLDADDEELA RLLHPTFRAA RPA

Best Arabidopsis Sequence Match ( AT4G02500.1 )
(BLAST)

001: MIERCLGAYR CRRIQRALRQ LKVTILCLLL TVVVLRSTIG AGKFGTPEQD LDEIRQHFHA RKRGEPHRVL EEIQTGGDSS SGDGGGNSGG SNNYETFDIN
101: KIFVDEGEEE KPDPNKPYTL GPKISDWDEQ RSDWLAKNPS FPNFIGPNKP RVLLVTGSAP KPCENPVGDH YLLKSIKNKI DYCRLHGIEI FYNMALLDAE
201: MAGFWAKLPL IRKLLLSHPE IEFLWWMDSD AMFTDMAFEL PWERYKDYNL VMHGWNEMVY DQKNWIGLNT GSFLLRNNQW ALDLLDTWAP MGPKGKIREE
301: AGKVLTRELK DRPVFEADDQ SAMVYLLATQ RDAWGNKVYL ESGYYLHGYW GILVDRYEEM IENYHPGLGD HRWPLVTHFV GCKPCGKFGD YPVERCLKQM
401: DRAFNFGDNQ ILQIYGFTHK SLASRKVKRV RNETSNPLEM KDELGLLHPA FKAVKVQTNQ V

Arabidopsis Description

XXT2Xyloglucan 6-xylosyltransferase 2 [Source:UniProtKB/Swiss-Prot;Acc:O22775]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.