CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: golgi

Predictor Summary:

nucleus 1
golgi 2
cytosol 1
mitochondrion 2
endoplasmic reticulum 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d047647_P001	Maize	mitochondrion	74.89	90.03
TraesCS4A01G120100.1	Wheat	endoplasmic reticulum, golgi, plasma membrane	72.42	73.41
TraesCS4B01G184600.1	Wheat	endoplasmic reticulum, golgi, peroxisome	72.87	72.71
TraesCS4D01G185900.1	Wheat	endoplasmic reticulum, golgi, peroxisome	72.65	72.48
TraesCS7D01G441500.1	Wheat	golgi	68.16	71.19
EER92377	Sorghum	golgi	70.85	70.85
HORVU4Hr1G054120.3	Barley	golgi, plasma membrane	72.65	69.98
TraesCS7A01G452400.1	Wheat	golgi	67.94	69.66
TraesCS7B01G352300.1	Wheat	golgi	66.37	68.2
HORVU7Hr1G102070.1	Barley	golgi	67.04	67.19
Os03t0305800-02	Rice	golgi	68.16	62.94
EES00270	Sorghum	golgi, mitochondrion	61.44	60.49
EER92398	Sorghum	golgi	48.65	48.65
EES16639	Sorghum	golgi	43.72	41.94
EES06903	Sorghum	plastid	43.95	40.83
EES08636	Sorghum	plastid	37.89	37.64
OQU83607	Sorghum	plastid	37.89	36.66
EES15672	Sorghum	mitochondrion	41.7	36.12
EES07343	Sorghum	golgi	35.65	35.89
OQU83610	Sorghum	cytosol, golgi, peroxisome, plastid	37.0	34.45

Protein Annotations

MapMan:21.2.1.1.2	Gene3D:3.90.550.10	EntrezGene:8083993	UniProt:C5WMH7	EnsemblPlants:EER92376	ProteinID:EER92376
ProteinID:EER92376.1	GO:GO:0003674	GO:GO:0003824	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0005768	GO:GO:0005794	GO:GO:0005802	GO:GO:0005975	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009969	GO:GO:0009987	GO:GO:0016020	GO:GO:0016021
GO:GO:0016740	GO:GO:0016757	GO:GO:0016758	GO:GO:0033843	GO:GO:0035252	InterPro:Glyco_trans_34
InterPro:IPR029044	InterPro:Nucleotide-diphossugar_trans	PFAM:PF05637	PANTHER:PTHR31311	PANTHER:PTHR31311:SF7	EnsemblPlantsGene:SORBI_3001G396600
TMHMM:TMhelix	UniParc:UPI0001A82B26	RefSeq:XP_002465378.1	SEG:seg	:	:

Description

hypothetical protein

Coordinates

chr1:+:68221839..68223631

Molecular Weight (calculated)

50502.9 Da

IEP (calculated)

6.851

GRAVY (calculated)

-0.413

Length

446 amino acids

Sequence
(BLAST)

001: MSSEDDDRRP RQQRLLPVPI IPFVLFLVAP FALFMLTSPD LQWQLPRIRI EYDDDEPSSA PTHERTSSTP PRSPVLAGAK SDEEQRRLPL PPPRQLTDPP
101: YTLGAAVSDY DARRARWLHD NPRFPAFVAP GRPRVLVVTG SSPRRCGNAD GDHVLLRAFK NKVDYCRVHG FDVFYSNAVL DAELSGFWTK LPILRALMLA
201: HPETELLWWV DSDVVFTDML FEPPWGKYAG HNLVVPGWDD KVYAAKSWLG INAGSFIIRN CQWSLDLLDA WARMGPRGPV RYEYGKVLGK ALSDRPSYEA
301: DDQSALVYLL VTERGRWGDK TFLEGSYSLH GFWLAIVDRY EDMRRDATAT PGGGGGERWP LVTHFVGCKP CGGQYASYEA SRCRRGMERA LNFADDQILR
401: LYGFEHESLN TTAVRRVRND TGGPLDADDV EIGRLLHPTF RAARPW

Best Arabidopsis Sequence Match ( AT3G62720.1 )
(BLAST)

001: MIEKCIGAHR FRRLQRFMRQ GKVTILCLVL TVIVLRGTIG AGKFGTPEKD IEEIREHFFY TRKRGEPHRV LVEVSSKTTS SEDGGNGGNS YETFDINKLF
101: VDEGDEEKSR DRTNKPYSLG PKISDWDEQR RDWLKQNPSF PNFVAPNKPR VLLVTGSAPK PCENPVGDHY LLKSIKNKID YCRIHGIEIF YNMALLDAEM
201: AGFWAKLPLI RKLLLSHPEI EFLWWMDSDA MFTDMVFELP WERYKDYNLV MHGWNEMVYD QKNWIGLNTG SFLLRNSQWS LDLLDAWAPM GPKGKIREEA
301: GKVLTRELKD RPAFEADDQS AMVYLLATER EKWGGKVYLE SGYYLHGYWG ILVDRYEEMI ENHKPGFGDH RWPLVTHFVG CKPCGKFGDY PVERCLRQMD
401: RAFNFGDNQI LQMYGFTHKS LGSRRVKPTR NQTDRPLDAK DEFGLLHPPF KAAKLSTTTT

Arabidopsis Description

XXT1XXT1 [Source:UniProtKB/TrEMBL;Acc:A0A178VEJ0]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.