CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

cytosol 1
plasma membrane 3
golgi 1
mitochondrion 1
peroxisome 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
KRG93391	golgi
KRH03516	golgi
KRH18597	golgi
KRH56886	golgi

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G28180.1	KRH03516	AT1G74380.1	22665445
AT3G28180.1	KRH56886	AT1G74380.1	22665445
AT3G28180.1	KRG93391	AT3G28180.1	22665445
AT3G28180.1	KRH18597	AT3G28180.1	22665445

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH18597	Soybean	endoplasmic reticulum, peroxisome, plasma membrane	98.64	98.64
CDY00138	Canola	cytosol, peroxisome, plasma membrane	58.64	84.68
CDY04011	Canola	cytosol, peroxisome, plasma membrane	58.48	84.46
VIT_14s0066g01730.t01	Wine grape	plasma membrane	79.39	78.92
CDX85189	Canola	plasma membrane	77.42	77.78
CDX86448	Canola	plasma membrane	77.27	77.63
Solyc02g089640.2.1	Tomato	plasma membrane	76.36	77.06
PGSC0003DMT400026046	Potato	plasma membrane	76.21	76.91
AT3G28180.1	Thale cress	plasma membrane	77.73	76.23
CDY20029	Canola	plasma membrane	75.45	75.68
Bra025323.1-P	Field mustard	plasma membrane	77.12	75.41
Bra039061.1-P	Field mustard	plasma membrane	76.82	75.0
KRH61950	Soybean	plasma membrane	70.45	67.1
KRH52609	Soybean	plasma membrane	70.3	66.96
KRH47014	Soybean	cytosol, golgi, peroxisome, plastid	69.85	66.62
KRH44638	Soybean	cytosol	70.3	66.57
Bra033039.1-P	Field mustard	plasma membrane	32.73	66.26
CDY47235	Canola	plasma membrane	32.73	66.26
KRH16165	Soybean	plasma membrane	69.09	65.8
KRH04930	Soybean	plasma membrane	68.48	65.22
KRH15467	Soybean	plasma membrane	65.76	62.09
KRH61452	Soybean	plasma membrane	65.91	61.44
KRH52142	Soybean	plasma membrane	65.45	61.19
KRH07420	Soybean	plasma membrane	64.24	60.74
KRH66156	Soybean	endoplasmic reticulum	63.64	59.41
KRG96119	Soybean	plasma membrane	35.15	43.53
KRH67832	Soybean	plasma membrane	35.0	43.34
KRH34719	Soybean	plasma membrane	34.55	43.1
KRH55858	Soybean	cytosol	7.42	42.98
KRG92056	Soybean	plasma membrane	34.39	42.91
KRH20021	Soybean	plasma membrane	32.73	42.27
KRH32645	Soybean	plasma membrane	32.58	42.07
KRH22736	Soybean	plasma membrane	33.33	41.28
KRH30518	Soybean	endoplasmic reticulum	33.79	41.14
KRH25159	Soybean	endoplasmic reticulum	33.79	41.07
KRH67729	Soybean	plasma membrane	31.52	39.47
KRH57821	Soybean	plasma membrane	14.39	39.42
KRG96022	Soybean	plasma membrane	31.36	39.2

Protein Annotations

EMBL:ACUP02011551	EnsemblPlants:KRG93391	EnsemblPlantsGene:GLYMA_19G012700	EntrezGene:100818571	Gene3D:3.90.550.10	GO:GO:0005575
GO:GO:0016020	GO:GO:0016021	InterPro:Glyco_trans_2-like	InterPro:IPR029044	InterPro:Nucleotide-diphossugar_trans	PANTHER:PTHR32044
PANTHER:PTHR32044:SF11	PFAM:PF13632	ProteinID:KRG93391	ProteinID:KRG93391.1	SEG:seg	SUPFAM:SSF53448
TMHMM:TMhelix	UniParc:UPI000233E029	UniProt:I1N5W6	MapMan:21.2.1.1.1	:	:

Description

hypothetical protein

Coordinates

chr19:+:1216285..1219961

Molecular Weight (calculated)

76010.3 Da

IEP (calculated)

8.779

GRAVY (calculated)

0.071

Length

660 amino acids

Sequence
(BLAST)

001: MAPNTEKSNN NDFTLLQVHD SDSPMFPEKQ KATSRKQFTW FLLLKLHRVL TCLSWLTNCL KATFALVKKR VSLADMSDEG PKSRGKLYRF IKIFLALSIG
101: GLAIEIIAHF NKWNLHNMIQ PWEVQGLLQW CYVAWLSFRE DYVAPLVLMV SKFCIVLFLI QSLDRLVLCL GCFWIKYKKL KPTFEADACD VEDPSNFPMV
201: LVQIPMCNER EVYSQSIGAA AQLDWPKDRI LIQVLDDSDD GNLQLLIKEE VASWKEKGVN IVYRHRLIRT GYKAGNLKSA MSCDYVKDYE FVAILDADFQ
301: PNPDFLKLTI PHFKGKPDLG LVQARWSFVN KDENLLTRLQ NINLCFHFEV EQQVNGYFLN FFGFNGTAGV WRIKALEESG GWLERTTVED MDIAVRAHLN
401: GWKFIFLNDV KVLCELPESY EAYKKQQHRW HSGPMQLFRL CLPAILTSKI SVWKKTNLIF LFFLLRKLIL PFYSFTLFCI ILPLTMFIPE SELPLWVICY
501: VPIIMSFLNI LPSPKSIPFL VPYLLFENTM SVTKFNAMIS GLFQLGSAYE WVVTKKTGRS SESDLLALAE RESKSSNEEK ILRRHSESGL ELLGKLKQSE
601: VPSKKKRNKL YRKELALALL LLTASARSLL SAHGVHFYFL LFQGLSFLIM GLDLIGEQVS

Best Arabidopsis Sequence Match ( AT3G28180.1 )
(BLAST)

001: MAPNSVAVTM EKPDNFSLLE INGSDPSSFP DKRKSISPKQ FSWFLLLKAH RLISCLSWLV SSVKKRIAFS AKNINEEEDP KSRGKQMYRF IKACLVISII
101: ALSIEIVAHF KKWNLDLINR PSWEVYGLVE WSYMAWLSFR SDYIAPLVIS LSRFCTVLFL IQSLDRLVLC LGCFWIKFKK IEPKLTEESI DLEDPSSFPM
201: VLIQIPMCNE REVYEQSIGA ASQLDWPKDR ILIQVLDDSD DPNLQLLIKE EVSVWAEKGV NIIYRHRLIR TGYKAGNLKS AMTCDYVKDY EFVTIFDADF
301: TPNPDFLKKT VPHFKGNPEL GLVQARWSFV NKDENLLTRL QNINLCFHFE VEQQVNGVFL NFFGFNGTAG VWRIKALEES GGWLERTTVE DMDIAVRAHL
401: NGWKFIYLND VEVTCELPES YEAYKKQQHR WHSGPMQLFR LCLPSIIKSK ISVWKKANLI FLFFLLRKLI LPFYSFTLFC IILPLTMFIP EAELPLWIIC
501: YVPIFISLLN ILPSPKSFPF LVPYLLFENT MSITKFNAMI SGLFQFGSAY EWVVTKKTGR SSESDLLAFA EKEEKLHRRN SESGLELLSK LKEQETNLVG
601: QETVKKSLGG LMRPKNKKKT NMVFKKELGL AFLLLTAAAR SFLSAHGLHF YFLLFQGLSF LVVGLDLIGE QIS

Arabidopsis Description

CSLC4Glycosyltransferase (Fragment) [Source:UniProtKB/TrEMBL;Acc:W8Q6R3]
SUBAcon: [plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.