CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

cytosol 1
endoplasmic reticulum 1
mitochondrion 1
plasma membrane 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plasma membrane
Any Predictor:	cytosol, endoplasmic reticulum, plasma membrane
BaCelLo:	cytosol
MultiLoc:	endoplasmic reticulum
PProwler:	mitochondrion
WoLF PSORT:	plasma membrane
YLoc:	plasma membrane

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX68187	golgi
CDX73082	golgi
CDX85189	golgi
CDX85826	golgi
CDX86448	golgi
CDX96540	golgi
CDY00138	golgi
CDY04011	golgi
CDY20029	golgi
CDY47235	golgi
CDY49114	golgi

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G28180.1	CDX68187	AT1G74380.1	22665445
AT3G28180.1	CDX73082	AT1G74380.1	22665445
AT3G28180.1	CDX85826	AT1G74380.1	22665445
AT3G28180.1	CDX96540	AT1G74380.1	22665445
AT3G28180.1	CDY49114	AT1G74380.1	22665445
AT3G28180.1	CDX85189	AT3G28180.1	22665445
AT3G28180.1	CDX86448	AT3G28180.1	22665445
AT3G28180.1	CDY00138	AT3G28180.1	22665445
AT3G28180.1	CDY04011	AT3G28180.1	22665445
AT3G28180.1	CDY20029	AT3G28180.1	22665445
AT3G28180.1	CDY47235	AT3G28180.1	22665445

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX86448	Canola	plasma membrane	99.85	99.85
CDY00138	Canola	cytosol, peroxisome, plasma membrane	66.06	94.97
CDY04011	Canola	cytosol, peroxisome, plasma membrane	65.6	94.31
CDY20029	Canola	plasma membrane	93.91	93.77
AT3G28180.1	Thale cress	plasma membrane	94.06	91.83
CDY47235	Canola	plasma membrane	44.14	88.96
KRH18597	Soybean	endoplasmic reticulum, peroxisome, plasma membrane	78.08	77.73
KRG93391	Soybean	plasma membrane	77.78	77.42
VIT_14s0066g01730.t01	Wine grape	plasma membrane	77.63	76.81
PGSC0003DMT400026046	Potato	plasma membrane	74.28	74.62
Solyc02g089640.2.1	Tomato	plasma membrane	74.28	74.62
CDY34018	Canola	cytosol, endoplasmic reticulum, plasma membrane	60.73	70.37
CDX72314	Canola	plasma membrane	69.86	67.11
CDY13445	Canola	plasma membrane	69.71	66.67
CDX76802	Canola	plasma membrane	66.82	66.52
CDY57881	Canola	extracellular	12.48	65.6
CDY34762	Canola	endoplasmic reticulum, peroxisome, plasma membrane	68.19	65.5
CDX83148	Canola	plasma membrane	65.45	62.14
CDX68766	Canola	plasma membrane	69.56	58.97
CDY08003	Canola	cytosol, peroxisome, plasma membrane	60.88	57.55
CDX74051	Canola	cytosol, peroxisome, plasma membrane	60.88	57.22
CDY60854	Canola	plasma membrane	69.56	52.23
CDX75177	Canola	cytosol	22.07	49.83
CDY47369	Canola	plasma membrane	21.31	46.67
CDX69464	Canola	cytosol, peroxisome, plasma membrane	30.59	45.37
CDX70677	Canola	cytosol, peroxisome, plasma membrane	30.44	45.15
CDY09672	Canola	golgi	23.74	44.32
CDY01129	Canola	plasma membrane	34.86	42.57
CDY35710	Canola	plasma membrane	33.03	42.47
CDY09164	Canola	plasma membrane	32.88	42.35
CDY32110	Canola	mitochondrion	28.31	42.27
CDX78675	Canola	plasma membrane	32.42	42.26
CDY10358	Canola	plasma membrane	34.09	42.11
CDY11268	Canola	plasma membrane	34.09	42.11
CDX70286	Canola	plasma membrane	34.09	42.11
CDX71011	Canola	plasma membrane	32.57	41.96
CDY26949	Canola	plasma membrane	32.57	41.96
CDX88785	Canola	plasma membrane	32.57	41.96
CDY26505	Canola	plasma membrane	32.72	41.91
CDX79614	Canola	plasma membrane	34.7	41.38
CDY32100	Canola	cytosol	1.07	41.18
CDY44151	Canola	plasma membrane	34.25	40.54
CDY04707	Canola	plasma membrane	34.25	40.54
CDY32098	Canola	plasma membrane	33.49	40.52
CDX72181	Canola	plasma membrane	31.96	40.15
CDY54604	Canola	plasma membrane	31.66	39.69
CDY47368	Canola	endoplasmic reticulum, extracellular	3.5	39.66
CDY40295	Canola	plasma membrane	32.88	39.56
CDY68733	Canola	plasma membrane	15.98	38.6
CDX90506	Canola	plasma membrane	32.27	38.34
CDY40448	Canola	plasma membrane	33.79	37.5
CDX80885	Canola	plasma membrane	27.7	34.67
CDX84607	Canola	mitochondrion	5.48	30.0
CDX92340	Canola	plasma membrane	32.88	22.86

Protein Annotations

EnsemblPlants:CDX85189	EnsemblPlantsGene:GSBRNA2T00142797001	Gene3D:3.90.550.10	GO:A0A078DA95	InterPro:IPR029044	InterPro:Nucleotide-diphossugar_trans
PANTHER:PTHR32044	PANTHER:PTHR32044:SF11	PFAM:PF13641	ProteinID:CDX85189	ProteinID:CDX85189.1	SEG:seg
SUPFAM:SSF53448	TMHMM:TMhelix	UniParc:UPI0004EEEE4F	MapMan:21.2.1.1.1	:	:

Description

BnaC07g25000D

Coordinates

chrLK031841:+:57810..61436

Molecular Weight (calculated)

75661.5 Da

IEP (calculated)

8.186

GRAVY (calculated)

0.084

Length

657 amino acids

Sequence
(BLAST)

001: MAPNSVAVTM EKPDNFSLLE INGSDPSSFP DNKRKSISPK QFSWFILLKA HRLVSSLSWL FASVKKRLAF SSKAINEEED PKSRGKQMYR FIKACLVISI
101: VALLIEIVAY YKNWNLDLVN RPSWEVRGLV EWSYVAWLSF RSDYIAPIVI TLSKFCTVLF LIQSLDRLVL CLGCFWIKFK KIEPKLKDDE LDLEDASNFP
201: MVLIQIPMCN EREVYEQSIG AASQLDWPKD RILIQVLDDS DDPNLQLLIK EEVAAWAEKG VNIIYRHRLI RTGYKAGNLK SAMTCDYVKD YEFVTIFDAD
301: FTPSPDFLKK TIPHFKGNPE LGLVQARWSF VNKDENLLTR LQNINLCFHF EVEQQVNGVF LNFFGFNGTA GVWRIKALEE SGGWLERTTV EDMDIAVRAH
401: LNGWKFIYLN DVEVTCELPE SYEAYKKQQH RWHSGPMQLF RLCLPSIIKS KISVGKKANL IFLFFLLRKL ILPFYSFTLF CIILPLTMFI PEAELPLWII
501: CYVPIFISLL NILPSPKSFP FLIPYLLFEN TMSITKFNAM ISGLFQLGSA YEWVVTKKTG RSSESDLLAF AEKEEKLHRR NSESGLELLS KLKEQEMNLA
601: IKKRNMVFKK ELGLAFLLLT AAARSFLSAH GLHFYFLLFQ GLSFLVVGLD LIGEQIN

Best Arabidopsis Sequence Match ( AT3G28180.1 )
(BLAST)

001: MAPNSVAVTM EKPDNFSLLE INGSDPSSFP DKRKSISPKQ FSWFLLLKAH RLISCLSWLV SSVKKRIAFS AKNINEEEDP KSRGKQMYRF IKACLVISII
101: ALSIEIVAHF KKWNLDLINR PSWEVYGLVE WSYMAWLSFR SDYIAPLVIS LSRFCTVLFL IQSLDRLVLC LGCFWIKFKK IEPKLTEESI DLEDPSSFPM
201: VLIQIPMCNE REVYEQSIGA ASQLDWPKDR ILIQVLDDSD DPNLQLLIKE EVSVWAEKGV NIIYRHRLIR TGYKAGNLKS AMTCDYVKDY EFVTIFDADF
301: TPNPDFLKKT VPHFKGNPEL GLVQARWSFV NKDENLLTRL QNINLCFHFE VEQQVNGVFL NFFGFNGTAG VWRIKALEES GGWLERTTVE DMDIAVRAHL
401: NGWKFIYLND VEVTCELPES YEAYKKQQHR WHSGPMQLFR LCLPSIIKSK ISVWKKANLI FLFFLLRKLI LPFYSFTLFC IILPLTMFIP EAELPLWIIC
501: YVPIFISLLN ILPSPKSFPF LVPYLLFENT MSITKFNAMI SGLFQFGSAY EWVVTKKTGR SSESDLLAFA EKEEKLHRRN SESGLELLSK LKEQETNLVG
601: QETVKKSLGG LMRPKNKKKT NMVFKKELGL AFLLLTAAAR SFLSAHGLHF YFLLFQGLSF LVVGLDLIGE QIS

Arabidopsis Description

CSLC4Glycosyltransferase (Fragment) [Source:UniProtKB/TrEMBL;Acc:W8Q6R3]
SUBAcon: [plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.