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Canola
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Canola
Subcellular Localization
min:
: max

 
Winner_takes_all: plasma membrane

Predictor Summary:
  • cytosol 1
  • endoplasmic reticulum 2
  • extracellular 1
  • vacuole 1
  • plasma membrane 3
  • golgi 1
Predictors GFP MS/MS Papers
Winner Takes All:plasma membrane
Any Predictor:cytosol, endoplasmic reticulum, plasma membrane
BaCelLo:cytosol
MultiLoc:endoplasmic reticulum
PProwler:secretory
WoLF PSORT:plasma membrane
YLoc:plasma membrane
PPI

Inferred distinct locusB in Crop

locusBlocations
CDY22597
CDY41739
CDY43007
CDY60257
CDY67026

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT5G03760.1 CDY22597 AT1G32230.1 19548978
AT5G03760.1 CDY41739 AT1G32230.1 19548978
AT5G03760.1 CDY43007 AT1G32230.1 19548978
AT5G03760.1 CDY60257 AT1G32230.1 19548978
AT5G03760.1 CDY67026 AT1G32230.1 19548978
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
Bra005779.1-P Field mustard plasma membrane 99.44 99.44
CDX70286 Canola plasma membrane 96.8 96.8
CDY10358 Canola plasma membrane 96.8 96.8
AT5G03760.1 Thale cress plasma membrane 94.17 94.0
CDX80885 Canola plasma membrane 84.21 85.33
Solyc09g009010.2.1 Tomato cytosol, peroxisome, plasma membrane 47.18 83.95
Solyc10g083670.1.1 Tomato plasma membrane 82.33 82.18
KRH67832 Soybean plasma membrane 82.33 82.18
KRG96119 Soybean plasma membrane 82.14 81.99
PGSC0003DMT400072644 Potato plasma membrane 81.77 81.61
GSMUA_Achr10P... Banana plasma membrane 79.51 80.42
VIT_08s0007g03990.t01 Wine grape cytosol, peroxisome, plasma membrane 81.58 80.37
PGSC0003DMT400007050 Potato mitochondrion 79.32 79.17
GSMUA_Achr2P20260_001 Banana plasma membrane 78.95 78.8
KRH32645 Soybean plasma membrane 75.56 78.67
GSMUA_Achr10P... Banana plasma membrane 78.76 78.61
KRH20021 Soybean plasma membrane 75.38 78.47
GSMUA_Achr6P13400_001 Banana plasma membrane 79.89 78.41
CDX88785 Canola plasma membrane 69.17 72.16
CDY35710 Canola plasma membrane 69.17 72.02
CDX71011 Canola plasma membrane 68.8 71.76
CDY26949 Canola plasma membrane 68.8 71.76
CDY09164 Canola plasma membrane 68.8 71.76
CDX69464 Canola cytosol, peroxisome, plasma membrane 56.02 67.27
CDX70677 Canola cytosol, peroxisome, plasma membrane 55.64 66.82
GSMUA_Achr5P15920_001 Banana plasma membrane 74.25 65.83
CDX78675 Canola plasma membrane 62.03 65.48
CDY26505 Canola plasma membrane 62.03 64.33
CDY47369 Canola plasma membrane 35.71 63.33
CDY09672 Canola golgi 41.54 62.78
CDY44151 Canola plasma membrane 65.23 62.52
CDY04707 Canola plasma membrane 65.04 62.34
CDY32110 Canola mitochondrion 51.32 62.05
CDY32098 Canola plasma membrane 62.97 61.69
CDY68733 Canola plasma membrane 31.39 61.4
CDX79614 Canola plasma membrane 63.53 61.34
CDX72181 Canola plasma membrane 59.77 60.8
CDY54604 Canola plasma membrane 59.77 60.69
CDY40295 Canola plasma membrane 61.09 59.52
CDY01129 Canola plasma membrane 59.77 59.11
CDY47368 Canola endoplasmic reticulum, extracellular 6.39 58.62
CDY40448 Canola plasma membrane 63.53 57.09
CDX90506 Canola plasma membrane 57.89 55.7
CDX84607 Canola mitochondrion 11.28 50.0
CDY04011 Canola cytosol, peroxisome, plasma membrane 39.66 46.17
CDY00138 Canola cytosol, peroxisome, plasma membrane 38.91 45.3
CDY32100 Canola cytosol 1.32 41.18
CDY34018 Canola cytosol, endoplasmic reticulum, plasma membrane 42.11 39.51
CDX92340 Canola plasma membrane 68.61 38.62
CDX76802 Canola plasma membrane 44.36 35.76
CDY57881 Canola extracellular 8.27 35.2
CDY34762 Canola endoplasmic reticulum, peroxisome, plasma membrane 44.55 34.65
CDX72314 Canola plasma membrane 44.36 34.5
CDY13445 Canola plasma membrane 44.55 34.5
CDY20029 Canola plasma membrane 42.48 34.35
CDX86448 Canola plasma membrane 42.11 34.09
CDX85189 Canola plasma membrane 42.11 34.09
CDX83148 Canola plasma membrane 42.29 32.51
CDY08003 Canola cytosol, peroxisome, plasma membrane 41.92 32.09
CDX74051 Canola cytosol, peroxisome, plasma membrane 41.73 31.76
CDX68766 Canola plasma membrane 44.74 30.71
CDY60854 Canola plasma membrane 44.74 27.2
CDX75177 Canola cytosol 13.72 25.09
CDY47235 Canola plasma membrane 11.09 18.1
Protein Annotations
EnsemblPlants:CDY11268EnsemblPlantsGene:GSBRNA2T00049299001Gene3D:3.90.550.10GO:A0A078FGS2GO:GO:0005575GO:GO:0016020
GO:GO:0016021InterPro:IPR029044InterPro:Nucleotide-diphossugar_transPANTHER:PTHR32044PANTHER:PTHR32044:SF10PFAM:PF13641
ProteinID:CDY11268ProteinID:CDY11268.1SEG:segSUPFAM:SSF53448TMHMM:TMhelixUniParc:UPI0004EE1BEA
UniProt:A0A078FGS2MapMan:21.2.3.1.1.1::::
Description
BnaA03g01040DBnaA03g01040D protein [Source:UniProtKB/TrEMBL;Acc:A0A078FGS2]
Coordinates
chrLK032010:-:452784..457617
Molecular Weight (calculated)
60953.0 Da
IEP (calculated)
9.289
GRAVY (calculated)
0.121
Length
532 amino acids
Sequence
(BLAST)
001: MELGDSSAVI PDSFMGYRDD ITMQMTMILD QIRAPLIVPV LRLAVYICLT MSVMLFVERV YMGIVISLVK LFGRKPEKRF KWEPMKDDIE HGNSVYPMVL
101: VQIPMYNERE VYQLSIGAAC GLSWPSDRIV IQVLDDSTDP TIKDLVEKEC SRWASKGINI KYEIRDNRNG YKAGALKEGM KKSYVKSCDY VAIFDADFQP
201: EPDYLWRTVP FLLHNPKLAL VQARWKFVNS DECLMTRMQE MSLDYHFTVE QEVGSSTYAF FGFNGTAGIW RISALSEAGG WKDRTTVEDM DLAVRASLKG
301: WKFLYLGSLK VKNELPSTFK AYRYQQHRWS CGPANLFRKM ALEIMTNKNV TLWKKVHVIY SFFVVRKIVA HIVTFIFYCV VLPATVLVPE VTVPKWGAVY
401: IPSIITLLNA VGTPRSLHLM VFWILFENVM SLHRTKATFI GLLEGGRVNE WIVTEKLGDL KAKSATKTLK KLRFRFGDRI HVLELGVGMY LFFVGCYDVF
501: FGKNHYYLYL FAQAIAFFIA GLGQIGTIVP NS
Best Arabidopsis Sequence Match ( AT5G03760.1 )
(BLAST)
001: MELGDTTSVI PDSFMGYRDD ITMQMSMVLD QIRAPLIVPA LRLGVYICLT MSVMLFVERV YMGIVISLVK LFGRKPDKRF KYEPIKDDIE LGNSAYPMVL
101: IQIPMFNERE VYQLSIGAAC GLSWPSDRIV IQVLDDSTDP TIKDLVEMEC SRWASKGVNI KYEIRDNRNG YKAGALKEGM KKSYVKSCDY VAIFDADFQP
201: EADFLWRTVP YLLHNPKLAL VQARWKFVNS DECLMTRMQE MSLDYHFTVE QEVGSSTYAF FGFNGTAGIW RISALNEAGG WKDRTTVEDM DLAVRASLKG
301: WKFLYLGSLK VKNELPSTFK AYRYQQHRWS CGPANLFRKM AFEIMTNKNV TLWKKVHVIY SFFVVRKLVA HIVTFIFYCV ILPATVLVPE VTVPKWGAVY
401: IPSVITLLNA VGTPRSLHLM VFWILFENVM SLHRTKATFI GLLEGGRVNE WIVTEKLGDV KAKSATKTSK KVIRFRFGDR IHVLELGVGM YLLFVGCYDA
501: FFGKNHYYLY LFAQAIAFFI AGFGQIGTIV PNH
Arabidopsis Description
CSLA9RAT4 [Source:UniProtKB/TrEMBL;Acc:A0A178UH35]
SUBAcon: [plasma membrane]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.