Factsheet for PGSC0003DMT400007050

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

cytosol 1
endoplasmic reticulum 2
golgi 2
extracellular 1
vacuole 1
plasma membrane 3

Predictors

GFP

MS/MS

Papers

Winner Takes All:	mitochondrion
Any Predictor:	cytosol, secretory
BaCelLo:	cytosol
MultiLoc:	endoplasmic reticulum
Plant-mPloc:	golgi
PProwler:	secretory
WoLF PSORT:	plasma membrane
YLoc:	plasma membrane

mitochondrion: 24351685

msms PMID: 24351685 doi

F Salvato, JF Havelund, M Chen, RS Rao, A Rogowska-Wrzesinska, ON Jensen, DR Gang, JJ Thelen, IM Møller

Department of Biochemistry and Interdisciplinary Plant Group, University of Missouri, Columbia, Missouri 65211.

PPI

Inferred distinct locusB in Crop

locusB	locations
PGSC0003DMT400038368
PGSC0003DMT400043197

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G03760.1	PGSC0003DMT400038368	AT1G32230.1	19548978
AT5G03760.1	PGSC0003DMT400043197	AT1G32230.1	19548978

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc09g009010.2.1	Tomato	cytosol, peroxisome, plasma membrane	55.72	99.33
PGSC0003DMT400072644	Potato	plasma membrane	85.37	85.37
KRH67832	Soybean	plasma membrane	82.18	82.18
KRG96119	Soybean	plasma membrane	81.8	81.8
VIT_08s0007g03990.t01	Wine grape	cytosol, peroxisome, plasma membrane	81.99	80.93
GSMUA_Achr10P...	Banana	plasma membrane	79.55	80.61
GSMUA_Achr2P20260_001	Banana	plasma membrane	79.55	79.55
CDY11268	Canola	plasma membrane	79.17	79.32
CDY10358	Canola	plasma membrane	79.17	79.32
GSMUA_Achr10P...	Banana	plasma membrane	79.17	79.17
Bra005779.1-P	Field mustard	plasma membrane	78.99	79.14
Bra009512.1-P	Field mustard	plasma membrane	78.99	79.14
GSMUA_Achr6P13400_001	Banana	plasma membrane	80.3	78.97
CDX70286	Canola	plasma membrane	78.8	78.95
KRH32645	Soybean	plasma membrane	74.86	78.08
KRH20021	Soybean	plasma membrane	74.48	77.69
AT5G03760.1	Thale cress	plasma membrane	77.67	77.67
PGSC0003DMT400060105	Potato	cytosol	60.79	75.0
PGSC0003DMT400018425	Potato	plasma membrane	70.73	70.73
PGSC0003DMT400009922	Potato	plasma membrane	31.52	69.14
PGSC0003DMT400070323	Potato	plasma membrane, plastid	68.29	68.68
PGSC0003DMT400068221	Potato	plasma membrane	67.35	68.51
CDX80885	Canola	plasma membrane	66.6	67.62
GSMUA_Achr5P15920_001	Banana	plasma membrane	75.42	67.0
PGSC0003DMT400026046	Potato	plasma membrane	42.03	34.25
PGSC0003DMT400024646	Potato	golgi, peroxisome, plasma membrane	44.28	34.01
PGSC0003DMT400030125	Potato	plasma membrane	41.65	33.33
PGSC0003DMT400095504	Potato	plasma membrane	30.02	31.94
PGSC0003DMT400012668	Potato	plasma membrane	44.28	31.81
PGSC0003DMT400053633	Potato	endoplasmic reticulum, plasma membrane, vacuole	8.82	26.7

Protein Annotations

EnsemblPlants:PGSC0003DMT400007050	EnsemblPlantsGene:PGSC0003DMG400002722	EntrezGene:102596604	Gene3D:3.90.550.10	GO:GO:0005575	GO:GO:0016020
GO:GO:0016021	InterPro:IPR029044	InterPro:Nucleotide-diphossugar_trans	PANTHER:PTHR32044	PANTHER:PTHR32044:SF10	PFAM:PF13641
PGSC:PGSC0003DMG400002722	RefSeq:XP_006341174.1	SUPFAM:SSF53448	TMHMM:TMhelix	UniParc:UPI0002956CCA	UniProt:M0ZSD8
MapMan:21.2.3.1.1.1	:	:	:	:	:

Description

Cellulose synthase-like A1 [Source:PGSC_GENE;Acc:PGSC0003DMG400002722]

Coordinates

chr9:-:3957641..3964503

Molecular Weight (calculated)

61051.7 Da

IEP (calculated)

8.812

GRAVY (calculated)

0.155

Length

533 amino acids

Sequence
(BLAST)

001: MEGLSRTNLV SDTFYGTRDD ITEQFGIMWG QIKAPLIVPL LRISVFLCLA MSVMLFIERV YMFVVITLLK VFGTKPEKRY KWEPLKDDVE LGNSSYPMVL
101: VQIPMYNEKE VYQLSIGAAC GLSWPSDRII VQVLDDSTDP ITKNLVDIEC QRWASKGINI KYEVRDNRSG YKAGALKEGL KHSYVKQCDF VAIFDADFQP
201: EPDFLWQTIP FLVHNPELSL VQARWKYVNA DECLMTRMQE MSLDYHFSVE QEVGSSTHAF FGFNGTAGVW RIAAIDEAGG WKDRTTVEDM DLAVRASLKG
301: WKFLFLGSVK VKNELPSTLK AYRYQQHRWS CGPANLFRKM CMEIIRNKKV SLWKKVHVIY SFFFVRKVVA HIVTFVFYVV VLPATVLVPE VEVPKWGAVY
401: IPAIITLLNA VGTPRSLHLL VFWILFENVM SLHRTKATFI GLLEAGRVNE WIVTEKLGDA LKLKSATKAF KKHRMRLGDR IHLLEFAAGA YLFFCGCYDI
501: AFGTNHYFLY LFIQSFAFLI VGFGYVGTFI PNS

Best Arabidopsis Sequence Match ( AT5G03760.1 )
(BLAST)

001: MELGDTTSVI PDSFMGYRDD ITMQMSMVLD QIRAPLIVPA LRLGVYICLT MSVMLFVERV YMGIVISLVK LFGRKPDKRF KYEPIKDDIE LGNSAYPMVL
101: IQIPMFNERE VYQLSIGAAC GLSWPSDRIV IQVLDDSTDP TIKDLVEMEC SRWASKGVNI KYEIRDNRNG YKAGALKEGM KKSYVKSCDY VAIFDADFQP
201: EADFLWRTVP YLLHNPKLAL VQARWKFVNS DECLMTRMQE MSLDYHFTVE QEVGSSTYAF FGFNGTAGIW RISALNEAGG WKDRTTVEDM DLAVRASLKG
301: WKFLYLGSLK VKNELPSTFK AYRYQQHRWS CGPANLFRKM AFEIMTNKNV TLWKKVHVIY SFFVVRKLVA HIVTFIFYCV ILPATVLVPE VTVPKWGAVY
401: IPSVITLLNA VGTPRSLHLM VFWILFENVM SLHRTKATFI GLLEGGRVNE WIVTEKLGDV KAKSATKTSK KVIRFRFGDR IHVLELGVGM YLLFVGCYDA
501: FFGKNHYYLY LFAQAIAFFI AGFGQIGTIV PNH

Arabidopsis Description

CSLA9RAT4 [Source:UniProtKB/TrEMBL;Acc:A0A178UH35]
SUBAcon: [plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.