Factsheet for PGSC0003DMT400024646

Subcellular Localization

min:

: max

Winner_takes_all: peroxisome, golgi, plasma membrane

Predictor Summary:

cytosol 1
golgi 2
plasma membrane 2
mitochondrion 1
peroxisome 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
PGSC0003DMT400015077
PGSC0003DMT400050482

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G31590.1	PGSC0003DMT400015077	AT5G22290.1	21798944
AT4G31590.1	PGSC0003DMT400050482	AT5G22290.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc08g006310.2.1	Tomato	golgi, peroxisome, plasma membrane	98.27	98.27
VIT_04s0069g00780.t01	Wine grape	plasma membrane	80.69	80.69
KRH61950	Soybean	plasma membrane	79.68	79.8
KRH52609	Soybean	plasma membrane	79.25	79.37
AT4G31590.1	Thale cress	plasma membrane	77.95	78.18
VIT_09s0018g01950.t01	Wine grape	endoplasmic reticulum, peroxisome, plasma membrane	77.38	77.49
CDX72314	Canola	plasma membrane	75.94	77.05
CDX76802	Canola	plasma membrane	73.2	76.97
Bra007838.1-P	Field mustard	cytosol, endoplasmic reticulum, plasma membrane	73.05	76.82
CDY13445	Canola	plasma membrane	75.79	76.56
Bra023993.1-P	Field mustard	plasma membrane	73.34	76.54
Os08t0253800-01	Rice	cytosol, peroxisome, plasma membrane	52.59	76.2
KRH16165	Soybean	plasma membrane	76.08	76.19
CDY34762	Canola	endoplasmic reticulum, peroxisome, plasma membrane	74.64	75.73
AT2G24630.1	Thale cress	endoplasmic reticulum, peroxisome, plasma membrane	75.22	75.65
KRH04930	Soybean	plasma membrane	74.93	75.04
PGSC0003DMT400053633	Potato	endoplasmic reticulum, plasma membrane, vacuole	18.01	71.02
CDY57881	Canola	extracellular	12.54	69.6
PGSC0003DMT400026046	Potato	plasma membrane	65.27	69.27
CDX68766	Canola	plasma membrane	76.51	68.52
PGSC0003DMT400030125	Potato	plasma membrane	63.11	65.77
HORVU3Hr1G000340.2	Barley	plasma membrane	61.1	65.63
TraesCSU01G038900.1	Wheat	cytosol, peroxisome, plasma membrane	68.59	63.47
Zm00001d049336_P001	Maize	plasma membrane	69.74	63.35
TraesCS3B01G000600.1	Wheat	cytosol, peroxisome, plasma membrane	68.3	63.12
KRH57821	Soybean	plasma membrane	21.9	63.07
TraesCS3D01G010500.1	Wheat	cytosol, peroxisome, plasma membrane	68.59	62.8
KXG24822	Sorghum	peroxisome	68.73	62.76
Zm00001d024178_P002	Maize	cytosol, peroxisome, plasma membrane	68.44	62.75
PGSC0003DMT400012668	Potato	plasma membrane	65.71	61.46
CDY60854	Canola	plasma membrane	76.8	60.91
PGSC0003DMT400095504	Potato	plasma membrane	41.64	57.68
Bra011284.1-P	Field mustard	plasma membrane	76.51	54.69
PGSC0003DMT400060105	Potato	cytosol	30.55	49.07
PGSC0003DMT400070323	Potato	plasma membrane, plastid	34.29	44.91
PGSC0003DMT400018425	Potato	plasma membrane	34.44	44.84
PGSC0003DMT400068221	Potato	plasma membrane	33.57	44.47
PGSC0003DMT400007050	Potato	mitochondrion	34.01	44.28
PGSC0003DMT400072644	Potato	plasma membrane	33.72	43.9
PGSC0003DMT400009922	Potato	plasma membrane	13.26	37.86

Protein Annotations

EnsemblPlants:PGSC0003DMT400024646	EnsemblPlantsGene:PGSC0003DMG400009536	EntrezGene:102578680	Gene3D:3.90.550.10	GO:GO:0005575	GO:GO:0016020
GO:GO:0016021	InterPro:Glyco_trans_2-like	InterPro:IPR029044	InterPro:Nucleotide-diphossugar_trans	PANTHER:PTHR32044	PANTHER:PTHR32044:SF7
PFAM:PF13632	PGSC:PGSC0003DMG400009536	RefSeq:XP_006357045.1	SEG:seg	SUPFAM:SSF53448	TMHMM:TMhelix
UniParc:UPI0002953A4E	UniProt:M1AKG4	MapMan:21.2.1.1.1	:	:	:

Description

Transferase, transferring glycosyl groups [Source:PGSC_GENE;Acc:PGSC0003DMG400009536]

Coordinates

chr8:-:2375248..2379577

Molecular Weight (calculated)

79229.1 Da

IEP (calculated)

8.710

GRAVY (calculated)

0.120

Length

694 amino acids

Sequence
(BLAST)

001: MAPRLNFSDW WGKDKQRGTP VIVKMENPNF SIVEIDGPDA AFKPIEKSRG KNAKQVTWVL LLKANQAVGC VAWLATILWS LIGTIKNRLI LRKGVSLASE
101: KLGKSNLLFR IIKVCLGVSL VMLAFEVIAY FKGWHYFQNP NLYVPHTSDV LGLFHIIYVV WLDFRADYIA PSVQKLSTFC TVLFLIQSLD RLVLCLGCFY
201: IKCKKIKPRI EGDPFKSDDL EGSNNSYYPM VLVQIPMCNE KEVYEMSISA VCQLDWPKDR LLIQILDDSD NECIQDLIKS EVAKWNHKGV NIIYRHRLVR
301: TGYKAGNLKS AMSCDYVKDY EFVAIFDADF QPTPDFLKQT VPHFKDNPEL GLVQTRWAFV NKDENLLTRL QNINLCFHFE VEQQVNGVFL NFFGFNGTAG
401: IWRIKALEES GGWLERTTVE DMDIAVRAHL NGWKFIYLND VRVLCEVPES FEAYRKQQHR WHSGPMQLFR VCLPAIVSSK ISIWKKANLI LLFFLLRKLI
501: LPFYSFTLFC VVLPLTMFIP EAELPFWVVC YIPILMTLLN ILPAPKSIPF IAPYLLFENT MSVTKFNAMV SGLFQLGSSY EWVVTKKAGR SSESDLLAAA
601: EKDLKAFGAP QISRGASESE LSELNRLNKQ KDETSTPVKK SNKIYRKELA LAFLLLTASA RSLLSAHGLH FYFLLFQGVT FLLVGLDLIG EQIS

Best Arabidopsis Sequence Match ( AT4G31590.1 )
(BLAST)

001: MAPRLDFSDW WAKDTRKGTP VVVKMENPNY SVVEIDGPDS AFRPVEKSRG KNAKQVTWVL LLKAHRAVGC LTWLATVFWS LLGAIKKRLS FTHPLGSEKL
101: GRDRWLFTAI KLFLAVSLVI LGFEIVAYFR GWHYFQSPSL HIPTSTLEIQ SLFHLVYVGW LTLRADYIAP PIKALSKFCI VLFLIQSVDR LVLCLGCFWI
201: KYKKIKPRFD EEPFRNDDAE GSGSEYPMVL VQIPMCNERE VYEQSISAVC QLDWPKDRIL VQVLDDSNDE SIQQLIKAEV AKWSQKGVNI IYRHRLVRTG
301: YKAGNLKSAM SCDYVEAYEY VAIFDADFQP TPDFLKLTVP HFKDNPELGL VQARWTFVNK DENLLTRLQN INLCFHFEVE QQVNGVFLNF FGFNGTAGVW
401: RIKALEESGG WLERTTVEDM DIAVRAHLHG WKFIYLNDVK VLCEVPESYE AYKKQQHRWH SGPMQLFRLC LGSILTSKIA IWKKANLILL FFLLRKLILP
501: FYSFTLFCII LPLTMFVPEA ELPVWVICYI PVFMSFLNLL PSPKSFPFIV PYLLFENTMS VTKFNAMVSG LFQLGSSYEW IVTKKAGRSS ESDLLSITEK
601: ETPTKKSQLL RGVSDSELLE LSQLEEQKQA VSKKPVKKTN KIYHKELALA FLLLTAALRS LLAAQGVHFY FLLFQGVTFL LVGLDLIGEQ MS

Arabidopsis Description

CSLC5CSLC5 [Source:UniProtKB/TrEMBL;Acc:A0A178UYZ0]
SUBAcon: [plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.