Factsheet for PGSC0003DMT400070323

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane, plastid

Predictor Summary:

plastid 4
endoplasmic reticulum 2
golgi 2
extracellular 1
plasma membrane 3
vacuole 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plasma membrane, plastid
Any Predictor:	plastid, secretory
BaCelLo:	plastid
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	endoplasmic reticulum
Plant-mPloc:	golgi
Predotar:	plastid
PProwler:	secretory
WoLF PSORT:	plasma membrane
YLoc:	plasma membrane

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc11g007600.1.1	Tomato	plasma membrane	96.42	96.6
PGSC0003DMT400060105	Potato	cytosol	64.72	79.4
PGSC0003DMT400072644	Potato	plasma membrane	70.0	69.61
TraesCS7B01G296100.1	Wheat	mitochondrion, plasma membrane	68.11	69.56
TraesCS7A01G394000.1	Wheat	plasma membrane	67.74	69.31
TraesCS7D01G389400.1	Wheat	plasma membrane	66.6	68.95
PGSC0003DMT400007050	Potato	mitochondrion	68.68	68.29
HORVU7Hr1G092910.2	Barley	plasma membrane	66.23	68.16
TraesCS7A01G393800.1	Wheat	plasma membrane	66.23	68.16
TraesCS7B01G295800.1	Wheat	plasma membrane	66.04	67.96
TraesCS7A01G394100.1	Wheat	plasma membrane	66.23	67.76
TraesCS7B01G296000.1	Wheat	plasma membrane, plastid	65.66	66.67
GSMUA_Achr6P07540_001	Banana	plasma membrane	66.23	66.48
Zm00001d046681_P001	Maize	plasma membrane	65.85	66.35
TraesCS7D01G389500.1	Wheat	plasma membrane, plastid	65.09	65.97
PGSC0003DMT400009922	Potato	plasma membrane	30.19	65.84
HORVU7Hr1G092990.4	Barley	endoplasmic reticulum	58.11	64.57
KXG20409	Sorghum	plasma membrane, plastid	65.09	64.37
Os06t0625700-01	Rice	plasma membrane	63.96	64.33
PGSC0003DMT400068221	Potato	plasma membrane	63.4	64.12
PGSC0003DMT400018425	Potato	plasma membrane	63.96	63.6
TraesCS7D01G389100.1	Wheat	plasma membrane	62.83	60.0
PGSC0003DMT400030125	Potato	plasma membrane	43.4	34.53
PGSC0003DMT400026046	Potato	plasma membrane	42.45	34.4
PGSC0003DMT400024646	Potato	golgi, peroxisome, plasma membrane	44.91	34.29
PGSC0003DMT400012668	Potato	plasma membrane	45.28	32.34
PGSC0003DMT400095504	Potato	plasma membrane	28.87	30.54
PGSC0003DMT400053633	Potato	endoplasmic reticulum, plasma membrane, vacuole	10.0	30.11

Protein Annotations

EntrezGene:102578162	MapMan:21.2.3.1.1.1	Gene3D:3.90.550.10	GO:GO:0005575	GO:GO:0016020	GO:GO:0016021
InterPro:Glyco_trans_2-like	InterPro:IPR029044	UniProt:M1CLZ9	InterPro:Nucleotide-diphossugar_trans	PFAM:PF13632	EnsemblPlantsGene:PGSC0003DMG400027343
PGSC:PGSC0003DMG400027343	EnsemblPlants:PGSC0003DMT400070323	PANTHER:PTHR32044	PANTHER:PTHR32044:SF21	SUPFAM:SSF53448	TMHMM:TMhelix
UniParc:UPI0002960BD9	RefSeq:XP_006360487.1	SEG:seg	:	:	:

Description

Cellulose synthase-like A1 [Source:PGSC_GENE;Acc:PGSC0003DMG400027343]

Coordinates

chr11:+:4674318..4678218

Molecular Weight (calculated)

61043.9 Da

IEP (calculated)

9.611

GRAVY (calculated)

0.109

Length

530 amino acids

Sequence
(BLAST)

001: MDVIFSSSQA LLNAHSGITS HVGFIRQQPR TPLVVQFLRI ILYVCLALSF MLFVERLYMG IVIAFVKLFR RKPEKKYKWE PLKGDLELGN YSYPMVLVQL
101: PMCNEKEVYQ LSIGAACNLS WPANRIFIQV LDDSTDPTIK ALVEQECRKW ASKGVNIKYE IRDNRKGYKA GALREGMKHN YVKLCSHVAI FDADFQPEPD
201: FLERSIPFLV HNPEIGLVQA RWEFVNADEC LMTKMQEMSF GYHFTVEQEV GSTAHAFFGF NGTAGVWRMS ALNEAGGWKD RTTVEDMDLA VRAGLNGWKF
301: VYVDDLKVKS ELPSTFRAYR NQQHRWSCGP ANLFRKMAME IATNKKVSVW KKFYLIYSFF FVRKIIAHVV TFILYCVVIP ATIFIPEVQV PRWGTIYIPT
401: AITLLNILGS ARSMQLVVYW ILFENVMSLH RTKATFIGLF ESGRVNEWIV TEKLGDALKT KKGSKALKKL QFRVGERVHV LELFVGLYLL FCGWYDYSFG
501: RNRFYVYLLL QAMAFFVVGF GYVGVFVPNS

Best Arabidopsis Sequence Match ( AT5G03760.1 )
(BLAST)

001: MELGDTTSVI PDSFMGYRDD ITMQMSMVLD QIRAPLIVPA LRLGVYICLT MSVMLFVERV YMGIVISLVK LFGRKPDKRF KYEPIKDDIE LGNSAYPMVL
101: IQIPMFNERE VYQLSIGAAC GLSWPSDRIV IQVLDDSTDP TIKDLVEMEC SRWASKGVNI KYEIRDNRNG YKAGALKEGM KKSYVKSCDY VAIFDADFQP
201: EADFLWRTVP YLLHNPKLAL VQARWKFVNS DECLMTRMQE MSLDYHFTVE QEVGSSTYAF FGFNGTAGIW RISALNEAGG WKDRTTVEDM DLAVRASLKG
301: WKFLYLGSLK VKNELPSTFK AYRYQQHRWS CGPANLFRKM AFEIMTNKNV TLWKKVHVIY SFFVVRKLVA HIVTFIFYCV ILPATVLVPE VTVPKWGAVY
401: IPSVITLLNA VGTPRSLHLM VFWILFENVM SLHRTKATFI GLLEGGRVNE WIVTEKLGDV KAKSATKTSK KVIRFRFGDR IHVLELGVGM YLLFVGCYDA
501: FFGKNHYYLY LFAQAIAFFI AGFGQIGTIV PNH

Arabidopsis Description

CSLA9RAT4 [Source:UniProtKB/TrEMBL;Acc:A0A178UH35]
SUBAcon: [plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.