Subcellular Localization
min:
: max
Winner_takes_all: endoplasmic reticulum, vacuole, plasma membrane
Predictor Summary:
Predictor Summary:
- nucleus 2
- extracellular 3
- endoplasmic reticulum 4
- vacuole 4
- plasma membrane 5
- golgi 3
- peroxisome 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| PGSC0003DMT400006495 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT3G07330.1 | PGSC0003DMT400006495 | AT3G16310.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Zm00001d010955_P001 | Maize | extracellular | 43.75 | 41.62 |
| Solyc09g057640.2.1 | Tomato | cytosol, peroxisome, plasma membrane | 96.59 | 24.78 |
| GSMUA_Achr6P27800_001 | Banana | plasma membrane | 76.14 | 20.74 |
| AT3G07330.1 | Thale cress | cytosol, peroxisome, plasma membrane | 77.27 | 19.94 |
| VIT_00s0580g00010.t01 | Wine grape | plasma membrane, plastid | 84.66 | 19.79 |
| PGSC0003DMT400026046 | Potato | plasma membrane | 72.73 | 19.57 |
| KRH07420 | Soybean | plasma membrane | 77.27 | 19.48 |
| CDY08003 | Canola | cytosol, peroxisome, plasma membrane | 76.7 | 19.42 |
| KRH66156 | Soybean | endoplasmic reticulum | 77.84 | 19.38 |
| Bra001246.1-P | Field mustard | cytosol, peroxisome, plasma membrane | 75.57 | 19.03 |
| CDX74051 | Canola | cytosol, peroxisome, plasma membrane | 75.57 | 19.03 |
| PGSC0003DMT400030125 | Potato | plasma membrane | 69.32 | 18.32 |
| PGSC0003DMT400024646 | Potato | golgi, peroxisome, plasma membrane | 71.02 | 18.01 |
| PGSC0003DMT400009922 | Potato | plasma membrane | 24.43 | 17.7 |
| PGSC0003DMT400012668 | Potato | plasma membrane | 69.89 | 16.58 |
| PGSC0003DMT400060105 | Potato | cytosol | 26.7 | 10.88 |
| PGSC0003DMT400070323 | Potato | plasma membrane, plastid | 30.11 | 10.0 |
| PGSC0003DMT400072644 | Potato | plasma membrane | 28.41 | 9.38 |
| PGSC0003DMT400007050 | Potato | mitochondrion | 26.7 | 8.82 |
| PGSC0003DMT400068221 | Potato | plasma membrane | 23.3 | 7.82 |
| PGSC0003DMT400018425 | Potato | plasma membrane | 22.73 | 7.5 |
| PGSC0003DMT400095504 | Potato | plasma membrane | 5.11 | 1.8 |
Protein Annotations
| EnsemblPlants:PGSC0003DMT400053633 | EnsemblPlantsGene:PGSC0003DMG400020806 | GO:GO:0005575 | GO:GO:0016020 | GO:GO:0016021 | PANTHER:PTHR32044 |
| PANTHER:PTHR32044:SF14 | PGSC:PGSC0003DMG400020806 | TMHMM:TMhelix | UniParc:UPI000295D238 | UniProt:M1BV87 | MapMan:35.1 |
Description
Xyloglucan glycosyltransferase 6 [Source:PGSC_GENE;Acc:PGSC0003DMG400020806]
Coordinates
chr9:-:32077255..32077785
Molecular Weight (calculated)
19685.3 Da
IEP (calculated)
9.674
GRAVY (calculated)
0.257
Length
176 amino acids
Sequence
(BLAST)
(BLAST)
001: MFLPEAQLPA WVVCYVPGLM SVLNILPAPQ SFPFIVPYLL FENTMSVTKF NAMVSGLFQL GSSYEWIVTK KSGRSSEADL VAMVENESES LLKKNTVSRS
101: SSESGLAELN KLEMTKKMGK RKRNRLYRKE LALAFILLTA SVRSLLSAQG IHFYFLLFQG FTFLVVGLDL IGEQVS
101: SSESGLAELN KLEMTKKMGK RKRNRLYRKE LALAFILLTA SVRSLLSAQG IHFYFLLFQG FTFLVVGLDL IGEQVS
001: MAPRFDFSDL WAKETRRGTP VVVKMENPNY SIVEVEEPDS AFQPMEKSRG KNAKQVTWVL LLKAHKAVGC LTWVATVFWS LLGSVKRRLS FTHPLGSERL
101: GRDGWLFSAI KLFLVASLAI LAFELVAYYR GWHYFKNPNL HIPTSKLEIQ SLLHLFYVGW LSLRADYIAP PIKALSKFCI VLFLVQSVDR LILCLGCLWI
201: KFKKIKPRID EEHFRNDDFE GSGSEYPMVL VQIPMCNERE VYEQSISAVC QLDWPKDRLL VQVLDDSDDE SIQELIRDEV TKWSQKGVNI IYRHRLVRTG
301: YKAGNLKSAM SCDYVEAYEF VAIFDADFQP NSDFLKLTVP HFKEKPELGL VQARWAFVNK DENLLTRLQN INLCFHFEVE QQVNGVFLNF FGFNGTAGVW
401: RIKALEESGG WLERTTVEDM DIAVRAHLHG WKFIYLNDVK VLCEVPESYE AYKKQQHRWH SGPMQLFRLC LRSILTSKIA MWKKANLILL FFLLRKLILP
501: FYSFTLFCVI LPITMFVPEA ELPIWVICYV PIFMSLLNIL PAPKSFPFIV PYLLFENTMS VTKFNAMVSG LFQLGSSYEW IVTKKAGRSS ESDLLALTDK
601: ESEKMPNQIL RGVSDSELLE ISQVEEQKKQ PVSVKKTNKI FHKELALAFL LLTAAVRSLL ASQGVHFYFL LFQGLTFLLV GLDLIGEQMS
101: GRDGWLFSAI KLFLVASLAI LAFELVAYYR GWHYFKNPNL HIPTSKLEIQ SLLHLFYVGW LSLRADYIAP PIKALSKFCI VLFLVQSVDR LILCLGCLWI
201: KFKKIKPRID EEHFRNDDFE GSGSEYPMVL VQIPMCNERE VYEQSISAVC QLDWPKDRLL VQVLDDSDDE SIQELIRDEV TKWSQKGVNI IYRHRLVRTG
301: YKAGNLKSAM SCDYVEAYEF VAIFDADFQP NSDFLKLTVP HFKEKPELGL VQARWAFVNK DENLLTRLQN INLCFHFEVE QQVNGVFLNF FGFNGTAGVW
401: RIKALEESGG WLERTTVEDM DIAVRAHLHG WKFIYLNDVK VLCEVPESYE AYKKQQHRWH SGPMQLFRLC LRSILTSKIA MWKKANLILL FFLLRKLILP
501: FYSFTLFCVI LPITMFVPEA ELPIWVICYV PIFMSLLNIL PAPKSFPFIV PYLLFENTMS VTKFNAMVSG LFQLGSSYEW IVTKKAGRSS ESDLLALTDK
601: ESEKMPNQIL RGVSDSELLE ISQVEEQKKQ PVSVKKTNKI FHKELALAFL LLTAAVRSLL ASQGVHFYFL LFQGLTFLLV GLDLIGEQMS
Arabidopsis Description
CSLC8Probable xyloglucan glycosyltransferase 8 [Source:UniProtKB/Swiss-Prot;Acc:Q9SJA2]
SUBAcon: [endoplasmic reticulum,plasma membrane,peroxisome]
SUBAcon: [endoplasmic reticulum,plasma membrane,peroxisome]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.