CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum

Predictor Summary:

cytosol 2
plasma membrane 2
golgi 1
mitochondrion 1
peroxisome 1

Predictors

GFP

MS/MS

Papers

endoplasmic reticulum: 27224218

msms PMID: 27224218 doi

X Wang, S Komatsu

Graduate School of Life and Environmental Sciences, University of Tsukuba , Tsukuba 305-8572, Japan., National Institute of Crop Science, National Agriculture and Food Research Organization , Tsukuba 305-8518, Japan.

PPI

Inferred distinct locusB in Crop

locusB	locations
KRH09922
KRH23409

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G07330.1	KRH09922	AT3G16310.1	21798944
AT3G07330.1	KRH23409	AT3G16310.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH07420	Soybean	plasma membrane	93.92	95.13
PGSC0003DMT400053633	Potato	endoplasmic reticulum, plasma membrane, vacuole	19.38	77.84
AT3G07330.1	Thale cress	cytosol, peroxisome, plasma membrane	72.28	74.93
GSMUA_Achr6P27800_001	Banana	plasma membrane	68.46	74.92
Solyc09g057640.2.1	Tomato	cytosol, peroxisome, plasma membrane	71.43	73.62
CDY08003	Canola	cytosol, peroxisome, plasma membrane	70.72	71.94
VIT_00s0580g00010.t01	Wine grape	plasma membrane, plastid	76.38	71.71
Bra001246.1-P	Field mustard	cytosol, peroxisome, plasma membrane	70.58	71.39
CDX74051	Canola	cytosol, peroxisome, plasma membrane	70.44	71.24
PGSC0003DMT400095504	Potato	plasma membrane	46.96	66.27
KRH15467	Soybean	plasma membrane	63.79	64.52
KRH18597	Soybean	endoplasmic reticulum, peroxisome, plasma membrane	59.97	64.24
KRG93391	Soybean	plasma membrane	59.41	63.64
KRH61950	Soybean	plasma membrane	61.39	62.63
KRH47014	Soybean	cytosol, golgi, peroxisome, plastid	61.24	62.57
KRH52609	Soybean	plasma membrane	61.24	62.48
KRH52142	Soybean	plasma membrane	61.81	61.9
KRH61452	Soybean	plasma membrane	61.95	61.86
KRH44638	Soybean	cytosol	60.82	61.69
KRH16165	Soybean	plasma membrane	59.69	60.89
KRH04930	Soybean	plasma membrane	59.12	60.32
KRH34719	Soybean	plasma membrane	33.1	44.23
KRG92056	Soybean	plasma membrane	32.96	44.05
KRG96119	Soybean	plasma membrane	33.1	43.9
KRH67832	Soybean	plasma membrane	33.1	43.9
KRH32645	Soybean	plasma membrane	31.68	43.84
KRH20021	Soybean	plasma membrane	31.4	43.44
KRH22736	Soybean	plasma membrane	31.4	41.65
KRH67729	Soybean	plasma membrane	30.55	40.99
KRG96022	Soybean	plasma membrane	30.41	40.72
KRH30518	Soybean	endoplasmic reticulum	31.12	40.59
KRH25159	Soybean	endoplasmic reticulum	31.12	40.52
KRH55858	Soybean	cytosol	6.51	40.35
Zm00001d010955_P001	Maize	extracellular	9.48	36.22
KRH57821	Soybean	plasma membrane	11.88	34.85

Protein Annotations

EMBL:ACUP02001912	EnsemblPlants:KRH66156	EnsemblPlantsGene:GLYMA_03G086600	EntrezGene:100820496	Gene3D:3.90.550.10	GO:GO:0005575
GO:GO:0016020	GO:GO:0016021	InterPro:IPR029044	InterPro:Nucleotide-diphossugar_trans	PANTHER:PTHR32044	PANTHER:PTHR32044:SF14
PFAM:PF13641	ProteinID:KRH66156	ProteinID:KRH66156.1	SEG:seg	SUPFAM:SSF53448	TMHMM:TMhelix
UniParc:UPI0002337289	UniProt:I1JM72	MapMan:21.2.1.1.1	:	:	:

Description

hypothetical protein

Coordinates

chr3:-:25553545..25563655

Molecular Weight (calculated)

81063.1 Da

IEP (calculated)

8.322

GRAVY (calculated)

-0.012

Length

707 amino acids

Sequence
(BLAST)

001: MSRTPNYEFQ EWWNKQREKN TTNTNNLDSL DSLDDNLKNL DHAHSPSSPP FTALDISSSS AADTSADHDH DRSGRKERSR SARQLSWVFL LKFQQLAANL
101: GWLSNGLLFL LRTGQRRIAT DSASFGDGGD TSRLYRAIRF FLITVLLLLV FELLAYFKGW HFSPPDPSDV LGVIGVVYST WLDVRASYLS PPLQSLANLC
201: TVLFIVQSVD RVVLILGCFW IKFRRLKPVA SVDYDGPVQS VEDFPMVLVQ IPMCNEREVY QQSIGAVCIL DWPKERMLVQ VLDDSDEVDT QQLIKAEVHK
301: WQQRGARIIY RHRLIRTGYK AGNLKSAMNC DYVKDYEFVA IFDADFQPTP DFLKKTVPYF KGKDDLALVQ ARWAFVNKDE NLLTRLQNIN LSFHFEVEQQ
401: VNGIFMNFFG FNGTAGVWRI KALEDSGGWL ERTTVEDMDI AVRAHLCGWK FVFLNDVKCL CELPETYEAY KKQQHRWHSG PMQLFRLCFL DILRSKVSWA
501: KKVNLIFLFF LLRKLILPFY SFTLFCIILP LTMFLPEAEL PAWVVCYIPG IMSLLSVLPA PRSFPFIVPY LLFENTMSVT KFNAMISGLL RFGSSYEWVV
601: TKKLGRSSET DLVAFEKEAE PLMRSNSLHR SSSDSGIEEL SKLELSKKTG KTKKNRLFRK ELYLAFILLA ASVRSLLSAQ GIHFYFLLFQ GISFLVVGLD
701: LIGEQVS

Best Arabidopsis Sequence Match ( AT3G07330.1 )
(BLAST)

001: MSRSQNEEFQ QWWNKQRDRN NHDVLYAGDD EAFLTVEIRT PATVDPDKDR IRTRTVRQLS RLYLLKFKQL ASSFLWIGNS FLYLVRTANR RIANDNPPSV
101: SSSARLYRLI KGFLVVVVLL LCFELAAYFK GWHFTPPSVA SAEVAVEVVY AWWLEIRASY LAPPLQSLTN VCIVLFLIQS VDRLVLVLGC FWIKLRRIKP
201: VASMEYPTKL VGEGVRLEDY PMVIVQIPMC NEKEVYQQSI GAVCMLDWPR ERMLVQVLDD SSELDVQQLI KAEVQKWQQR GVRIVYRHRL IRTGYKAGNL
301: KAAMNCEYVK DYEFVAIFDA DFQPPADFLK KTVPHFKGNE ELALVQTRWA FVNKDENLLT RLQNINLSFH FEVEQQVNGV FINFFGFNGT AGVWRIKALE
401: DCGGWLERTT VEDMDIAVRA HLCGWKFIYL NDVKCLCELP ESYEAYKKQQ YRWHSGPMQL FRLCFFDILR SKVSAAKKAN MIFLFFLLRK LILPFYSFTL
501: FCVILPLTMF FPEANLPSWV VCYIPGIMSI LNIIPAPRSF PFIVPYLLFE NTMSVTKFGA MISGLFKFDS SYEWVVTKKL GRSSEADLVA YAESGSLVES
601: TTIQRSSSDS GLTELSKLGA AKKAGKTKRN RLYRTEIALA FILLAASVRS LLSAQGIHFY FLLFQGITFV IVGLDLIGEQ VS

Arabidopsis Description

CSLC6Probable xyloglucan glycosyltransferase 6 [Source:UniProtKB/Swiss-Prot;Acc:Q9SRT3]
SUBAcon: [peroxisome,cytosol,plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.