Subcellular Localization
min:
: max
Winner_takes_all: endoplasmic reticulum, nucleus
Predictor Summary:
Predictor Summary:
- plastid 4
- mitochondrion 4
- nucleus 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
| nucleus:
21132161
endoplasmic reticulum: 27224218 |
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| KRH23409 | Soybean | mitochondrion | 97.28 | 97.28 |
| VIT_09s0002g03770.t01 | Wine grape | mitochondrion, plastid | 76.44 | 79.81 |
| AT3G16310.1 | Thale cress | plastid | 71.6 | 72.04 |
| PGSC0003DMT400006495 | Potato | mitochondrion, plastid | 69.18 | 68.36 |
| Bra027174.1-P | Field mustard | plastid | 68.28 | 67.66 |
| GSMUA_Achr6P14800_001 | Banana | plastid | 38.37 | 56.19 |
| CDY30157 | Canola | plastid | 69.49 | 54.25 |
| TraesCS3B01G158900.1 | Wheat | nucleus | 45.32 | 46.88 |
| HORVU3Hr1G026980.2 | Barley | nucleus, plastid | 43.81 | 46.62 |
| TraesCS3A01G313000.1 | Wheat | nucleus | 44.41 | 45.94 |
| TraesCS3D01G141300.1 | Wheat | nucleus | 44.11 | 45.91 |
| Solyc03g120880.2.1 | Tomato | nucleus | 68.28 | 45.02 |
| GSMUA_Achr4P15460_001 | Banana | mitochondrion, plastid | 48.64 | 44.97 |
| EES02290 | Sorghum | nucleus, plastid | 43.2 | 44.41 |
| Os01t0200500-01 | Rice | nucleus | 43.81 | 44.34 |
| Zm00001d008871_P001 | Maize | mitochondrion | 42.6 | 43.79 |
| GSMUA_Achr4P08270_001 | Banana | mitochondrion | 37.16 | 43.16 |
| EES19830 | Sorghum | mitochondrion | 33.53 | 34.05 |
| Os05t0520100-00 | Rice | mitochondrion | 33.84 | 33.84 |
| HORVU1Hr1G076010.1 | Barley | plastid | 33.84 | 33.84 |
| CDX97739 | Canola | plastid | 67.98 | 33.73 |
| HORVU3Hr1G071060.1 | Barley | plastid | 31.12 | 33.01 |
| TraesCS1D01G342600.1 | Wheat | plastid | 33.84 | 32.94 |
| Zm00001d038803_P001 | Maize | mitochondrion | 32.02 | 32.92 |
| TraesCS3B01G308400.1 | Wheat | plastid | 30.51 | 32.06 |
| TraesCS3D01G274500.1 | Wheat | plastid | 30.51 | 32.06 |
| TraesCS3A01G274800.1 | Wheat | plastid | 29.91 | 31.63 |
| Zm00001d010783_P001 | Maize | plastid | 32.93 | 31.5 |
| TraesCS1A01G340600.1 | Wheat | plastid | 30.51 | 29.88 |
Protein Annotations
| EntrezGene:100783752 | MapMan:23.5.1.1.6.5 | Gene3D:3.30.70.330 | EMBL:ACUP02009113 | EMBL:BT095715 | UniProt:C6TDQ3 |
| EnsemblPlantsGene:GLYMA_15G018900 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0003697 | GO:GO:0005215 |
| GO:GO:0005487 | GO:GO:0005488 | GO:GO:0005543 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
| GO:GO:0005634 | GO:GO:0005635 | GO:GO:0005643 | GO:GO:0006139 | GO:GO:0006355 | GO:GO:0006607 |
| GO:GO:0006810 | GO:GO:0006913 | GO:GO:0006999 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0008289 |
| GO:GO:0009058 | GO:GO:0009987 | GO:GO:0015031 | GO:GO:0016020 | GO:GO:0016043 | GO:GO:0031965 |
| GO:GO:0044613 | GO:GO:0044615 | GO:GO:0051028 | InterPro:IPR007846 | InterPro:IPR012677 | EnsemblPlants:KRH09922 |
| ProteinID:KRH09922 | ProteinID:KRH09922.1 | InterPro:Nucleoporin_NUP53 | InterPro:Nucleotide-bd_a/b_plait_sf | PFAM:PF05172 | PIRSF:PIRSF038119 |
| PFscan:PS51472 | PANTHER:PTHR21527 | InterPro:RBD_domain_sf | InterPro:RRM_NUP35_dom | SUPFAM:SSF54928 | UniParc:UPI0001B16802 |
Description
hypothetical protein
Coordinates
chr15:-:1439345..1443375
Molecular Weight (calculated)
36245.7 Da
IEP (calculated)
9.751
GRAVY (calculated)
-0.589
Length
331 amino acids
Sequence
(BLAST)
(BLAST)
001: MSTTVQRTPR SSRQSLFFQD LASPVSARRG KFSSPSQAAA VSSLWRENFG SSDLPPPPVF TLEDRSDFSP ESGILDYQIS PETKSDTRTP IQTSNKEFST
101: PVKSKSEAST SYALRGVQQN QQGSPGLSWW SPTTAKSGGE QDERGRSSPV EGVVQPGALI TLPPPLEVAR PEVQRNSLPA GNLNEEEWVT VYGFSPGDTN
201: MVLREFEKCG EILKHVPGPR DANWMHILYQ NRSDAHKALN KNGMQINGVL IVGVKLLDPM QRQALNERLK NQGFMPLPLP SARNSEVSSL KAPSRPYYLQ
301: NGNSTARQTG GTIASPTKSL VSKIMDLMFG V
101: PVKSKSEAST SYALRGVQQN QQGSPGLSWW SPTTAKSGGE QDERGRSSPV EGVVQPGALI TLPPPLEVAR PEVQRNSLPA GNLNEEEWVT VYGFSPGDTN
201: MVLREFEKCG EILKHVPGPR DANWMHILYQ NRSDAHKALN KNGMQINGVL IVGVKLLDPM QRQALNERLK NQGFMPLPLP SARNSEVSSL KAPSRPYYLQ
301: NGNSTARQTG GTIASPTKSL VSKIMDLMFG V
001: MSAAAHRTPK SGRQSLLFQD LASPVSARRG KFSSPGQAAA VSALWRENFG GSDLPPPPMY TLDDRSDFSP ESGIADYSAS PDAKSDRRTP FQSSGKNIVT
101: PGKGKLEASP SFSLLNAQQS QQVSGSPSWW SQSKAGSSTE QDDKGKGSPV EGVVQPGALV TLPPPREVAR PEVQRQIIPT GNLDEEEWVT VYGFSPGDTN
201: LVLREFEKCG MVLKHVPGPR NANWMHILYQ NRSDAHKALN KAGMMINGVV IVGVKPVDPI QKQALNERLN NQGFMPLPPP SSTRNTARPL SRPQYLQNGS
301: AFSPQPSGGA MASPSKSMVS KFFDLMFGV
101: PGKGKLEASP SFSLLNAQQS QQVSGSPSWW SQSKAGSSTE QDDKGKGSPV EGVVQPGALV TLPPPREVAR PEVQRQIIPT GNLDEEEWVT VYGFSPGDTN
201: LVLREFEKCG MVLKHVPGPR NANWMHILYQ NRSDAHKALN KAGMMINGVV IVGVKPVDPI QKQALNERLN NQGFMPLPPP SSTRNTARPL SRPQYLQNGS
301: AFSPQPSGGA MASPSKSMVS KFFDLMFGV
Arabidopsis Description
NUP35Nuclear pore complex protein NUP35 [Source:UniProtKB/Swiss-Prot;Acc:O04326]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.