CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol, plasma membrane, vacuole

Predictor Summary:

nucleus 1
cytosol 1
plasma membrane 3
extracellular 1
golgi 1
endoplasmic reticulum 1
vacuole 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, plasma membrane, vacuole
Any Predictor:	cytosol, nucleus, secretory
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	plasma membrane
PProwler:	secretory
WoLF PSORT:	vacuole
YLoc:	plasma membrane

PPI

Inferred distinct locusB in Crop

locusB	locations
KRH11076
KRH21197
KRH42923
KRH42926
KRH45251
KRH56393
KRH59035
KRH59036
KRH62532
KRH65384
KRH76164

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G28250.1	KRH65384	AT3G60600.1	21798944
AT1G28250.1	KRH76164	AT3G60600.1	21798944
AT1G28250.1	KRH11076	AT4G19030.1	21798944
AT1G28250.1	KRH21197	AT4G19030.1	21798944
AT1G28250.1	KRH42923	AT4G19030.1	21798944
AT1G28250.1	KRH42926	AT4G19030.1	21798944
AT1G28250.1	KRH45251	AT4G19030.1	21798944
AT1G28250.1	KRH59035	AT4G19030.1	21798944
AT1G28250.1	KRH59036	AT4G19030.1	21798944
AT1G28250.1	KRH56393	AT4G26455.1	21798944
AT1G28250.1	KRH62532	AT4G26455.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH20422	Soybean	cytosol, plasma membrane, vacuole	93.46	93.46
Solyc02g078010.2.1	Tomato	endoplasmic reticulum, plasma membrane, vacuole	62.62	60.36
CDY46615	Canola	endoplasmic reticulum, plasma membrane, vacuole	55.14	56.19
AT1G28250.1	Thale cress	endoplasmic reticulum, extracellular, vacuole	53.27	55.88
CDY35725	Canola	endoplasmic reticulum, plasma membrane, vacuole	48.6	54.17
Bra032886.1-P	Field mustard	endoplasmic reticulum, plasma membrane, vacuole	42.06	52.94
PGSC0003DMT400076381	Potato	endoplasmic reticulum, plasma membrane, vacuole	53.27	50.0
GSMUA_AchrUn_...	Banana	plasma membrane, vacuole	48.6	48.15
Zm00001d019447_P001	Maize	endoplasmic reticulum, plasma membrane, vacuole	41.12	40.37
HORVU6Hr1G014620.1	Barley	plasma membrane	39.25	38.53
Os07t0299600-01	Rice	cytosol, plasma membrane	41.12	37.93
TraesCSU01G016400.1	Wheat	plasma membrane	38.32	37.61
TraesCS6B01G112200.1	Wheat	plasma membrane	37.38	36.7
TraesCS6A01G090100.1	Wheat	plasma membrane	36.45	35.78
CDY46284	Canola	cytosol, peroxisome, plasma membrane	55.14	32.07
KXG34939	Sorghum	plastid	42.06	28.66

Protein Annotations

EMBL:ACUP02004656	EMBL:BT091892	EnsemblPlants:KRH50075	EnsemblPlantsGene:GLYMA_07G198400	EntrezGene:100527078	GO:GO:0005575
GO:GO:0016020	GO:GO:0016021	ProteinID:KRH50075	ProteinID:KRH50075.1	SEG:seg	TMHMM:TMhelix
UniParc:UPI0001B153B3	UniProt:C6T382	MapMan:35.2	:	:	:

Description

hypothetical protein

Coordinates

chr7:+:36695656..36697197

Molecular Weight (calculated)

11656.5 Da

IEP (calculated)

5.513

GRAVY (calculated)

0.741

Length

107 amino acids

Sequence
(BLAST)

001: MEHRNTESEA GDVSSATAVL LGALAPGVNG PTWITLKSTF LMLGLCLTVM LALAFSSSDS WLIFHVAFLV LICLTLFLLL SWFLAQTGLV SVEHQMREMG
101: LENLKSK

Best Arabidopsis Sequence Match ( AT1G28250.1 )
(BLAST)

001: MEKKSQISST EAVFLGALAP GVNGPTWNTL RFAFLLLGLC LAFMLSVAFT SGQSMLLVHV GFLIVIASTL FILLNWFLAQ TGLVQVETQM QELNLLPNDK
101: TK

Arabidopsis Description

F3H9.10 protein [Source:UniProtKB/TrEMBL;Acc:Q9FZ98]
SUBAcon: [extracellular,endoplasmic reticulum,vacuole]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.