Subcellular Localization
min:
: max
Winner_takes_all: plasma membrane
Predictor Summary:
Predictor Summary:
- plastid 1
- endoplasmic reticulum 3
- extracellular 2
- vacuole 2
- plasma membrane 4
- golgi 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS6B01G112200.1 | Wheat | plasma membrane | 94.5 | 94.5 |
| TraesCSU01G016400.1 | Wheat | plasma membrane | 94.5 | 94.5 |
| HORVU6Hr1G014620.1 | Barley | plasma membrane | 92.66 | 92.66 |
| Zm00001d019447_P001 | Maize | endoplasmic reticulum, plasma membrane, vacuole | 74.31 | 74.31 |
| GSMUA_AchrUn_... | Banana | plasma membrane, vacuole | 64.22 | 64.81 |
| Os07t0299600-01 | Rice | cytosol, plasma membrane | 66.06 | 62.07 |
| KXG34939 | Sorghum | plastid | 75.23 | 52.23 |
| CDY46615 | Canola | endoplasmic reticulum, plasma membrane, vacuole | 39.45 | 40.95 |
| Solyc02g078010.2.1 | Tomato | endoplasmic reticulum, plasma membrane, vacuole | 40.37 | 39.64 |
| AT1G28250.1 | Thale cress | endoplasmic reticulum, extracellular, vacuole | 35.78 | 38.24 |
| Bra032886.1-P | Field mustard | endoplasmic reticulum, plasma membrane, vacuole | 28.44 | 36.47 |
| KRH20422 | Soybean | cytosol, plasma membrane, vacuole | 35.78 | 36.45 |
| KRH50075 | Soybean | cytosol, plasma membrane, vacuole | 35.78 | 36.45 |
| CDY35725 | Canola | endoplasmic reticulum, plasma membrane, vacuole | 29.36 | 33.33 |
| PGSC0003DMT400076381 | Potato | endoplasmic reticulum, plasma membrane, vacuole | 29.36 | 28.07 |
| CDY46284 | Canola | cytosol, peroxisome, plasma membrane | 39.45 | 23.37 |
Protein Annotations
| EnsemblPlants:TraesCS6A01G090100.1 | EnsemblPlantsGene:TraesCS6A01G090100 | TMHMM:TMhelix | MapMan:35.2 | : | : |
Description
No Description!
Coordinates
chr6A:+:58019374..58019983
Molecular Weight (calculated)
11921.8 Da
IEP (calculated)
4.625
GRAVY (calculated)
0.777
Length
109 amino acids
Sequence
(BLAST)
(BLAST)
001: MAGQSLNQLS SAEAILVGAL SSGVNAPTWV VLQITFLLLA FCFTAMLYLA FFSSDFVIVG HVLLLITIGA VLFVLLNRFL AETGFVPVEQ QMQEIEIRKP
101: EATEKDKSK
101: EATEKDKSK
001: MEKKSQISST EAVFLGALAP GVNGPTWNTL RFAFLLLGLC LAFMLSVAFT SGQSMLLVHV GFLIVIASTL FILLNWFLAQ TGLVQVETQM QELNLLPNDK
101: TK
101: TK
Arabidopsis Description
F3H9.10 protein [Source:UniProtKB/TrEMBL;Acc:Q9FZ98]
SUBAcon: [endoplasmic reticulum,extracellular,vacuole]
SUBAcon: [endoplasmic reticulum,extracellular,vacuole]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.