Subcellular Localization
min:
: max
Winner_takes_all: endoplasmic reticulum, extracellular, vacuole
Predictor Summary:
Predictor Summary:
- plastid 3
- endoplasmic reticulum 3
- extracellular 3
- vacuole 3
- plasma membrane 2
- golgi 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY46615 | Canola | endoplasmic reticulum, plasma membrane, vacuole | 79.41 | 77.14 |
| Bra032886.1-P | Field mustard | endoplasmic reticulum, plasma membrane, vacuole | 63.73 | 76.47 |
| CDY35725 | Canola | endoplasmic reticulum, plasma membrane, vacuole | 69.61 | 73.96 |
| KRH20422 | Soybean | cytosol, plasma membrane, vacuole | 55.88 | 53.27 |
| KRH50075 | Soybean | cytosol, plasma membrane, vacuole | 55.88 | 53.27 |
| Solyc02g078010.2.1 | Tomato | endoplasmic reticulum, plasma membrane, vacuole | 53.92 | 49.55 |
| CDY46284 | Canola | cytosol, peroxisome, plasma membrane | 77.45 | 42.93 |
| PGSC0003DMT400076381 | Potato | endoplasmic reticulum, plasma membrane, vacuole | 43.14 | 38.6 |
| GSMUA_AchrUn_... | Banana | plasma membrane, vacuole | 40.2 | 37.96 |
| TraesCS6A01G090100.1 | Wheat | plasma membrane | 38.24 | 35.78 |
| TraesCS6B01G112200.1 | Wheat | plasma membrane | 38.24 | 35.78 |
| TraesCSU01G016400.1 | Wheat | plasma membrane | 38.24 | 35.78 |
| HORVU6Hr1G014620.1 | Barley | plasma membrane | 37.25 | 34.86 |
| Zm00001d019447_P001 | Maize | endoplasmic reticulum, plasma membrane, vacuole | 37.25 | 34.86 |
| Os07t0299600-01 | Rice | cytosol, plasma membrane | 37.25 | 32.76 |
| KXG34939 | Sorghum | plastid | 38.24 | 24.84 |
Protein Annotations
| MapMan:35.2 | EntrezGene:839719 | UniProt:A0A178W219 | ProteinID:AAF98430.1 | ProteinID:AEE30936.1 | EMBL:AK119001 |
| ArrayExpress:AT1G28250 | EnsemblPlantsGene:AT1G28250 | RefSeq:AT1G28250 | TAIR:AT1G28250 | RefSeq:AT1G28250-TAIR-G | EnsemblPlants:AT1G28250.1 |
| TAIR:AT1G28250.1 | EMBL:AY086367 | Unigene:At.43304 | EMBL:BT005445 | GO:GO:0003674 | GO:GO:0005488 |
| GO:GO:0005515 | GO:GO:0005575 | GO:GO:0008150 | GO:GO:0016020 | GO:GO:0016021 | RefSeq:NP_564302.1 |
| ProteinID:OAP12176.1 | PO:PO:0000013 | PO:PO:0000037 | PO:PO:0000230 | PO:PO:0000293 | PO:PO:0001017 |
| PO:PO:0001054 | PO:PO:0001078 | PO:PO:0001081 | PO:PO:0001185 | PO:PO:0004507 | PO:PO:0007064 |
| PO:PO:0007095 | PO:PO:0007098 | PO:PO:0007103 | PO:PO:0007115 | PO:PO:0007123 | PO:PO:0007611 |
| PO:PO:0007616 | PO:PO:0008019 | PO:PO:0009005 | PO:PO:0009006 | PO:PO:0009009 | PO:PO:0009010 |
| PO:PO:0009025 | PO:PO:0009029 | PO:PO:0009030 | PO:PO:0009031 | PO:PO:0009032 | PO:PO:0009046 |
| PO:PO:0009047 | PO:PO:0009052 | PO:PO:0020030 | PO:PO:0020038 | PO:PO:0020100 | PO:PO:0020137 |
| PO:PO:0025022 | PO:PO:0025195 | PO:PO:0025281 | UniProt:Q9FZ98 | TMHMM:TMhelix | UniParc:UPI000000C65D |
| SEG:seg | : | : | : | : | : |
Description
F3H9.10 protein [Source:UniProtKB/TrEMBL;Acc:Q9FZ98]
Coordinates
chr1:+:9874247..9875579
Molecular Weight (calculated)
11159.9 Da
IEP (calculated)
7.361
GRAVY (calculated)
0.731
Length
102 amino acids
Sequence
(BLAST)
(BLAST)
001: MEKKSQISST EAVFLGALAP GVNGPTWNTL RFAFLLLGLC LAFMLSVAFT SGQSMLLVHV GFLIVIASTL FILLNWFLAQ TGLVQVETQM QELNLLPNDK
101: TK
101: TK
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.