CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol, plasma membrane, peroxisome

Predictor Summary:

nucleus 1
cytosol 1
mitochondrion 1
plasma membrane 1
peroxisome 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, peroxisome, plasma membrane
Any Predictor:	cytosol, nucleus, peroxisome
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	plasma membrane
YLoc:	peroxisome

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX67837
CDX71796
CDX78905
CDX89063
CDX89333
CDX94330
CDX98596
CDX99411
CDY01565
CDY41153
CDY48365

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G28250.1	CDX67837	AT3G60600.1	21798944
AT1G28250.1	CDX71796	AT3G60600.1	21798944
AT1G28250.1	CDX89063	AT3G60600.1	21798944
AT1G28250.1	CDY41153	AT3G60600.1	21798944
AT1G28250.1	CDY48365	AT3G60600.1	21798944
AT1G28250.1	CDX78905	AT4G19030.1	21798944
AT1G28250.1	CDX98596	AT4G19030.1	21798944
AT1G28250.1	CDX99411	AT4G19030.1	21798944
AT1G28250.1	CDY01565	AT4G19030.1	21798944
AT1G28250.1	CDX89333	AT4G26455.1	21798944
AT1G28250.1	CDX94330	AT4G26455.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY46615	Canola	endoplasmic reticulum, plasma membrane, vacuole	55.43	97.14
Bra032886.1-P	Field mustard	endoplasmic reticulum, plasma membrane, vacuole	41.85	90.59
CDY35725	Canola	endoplasmic reticulum, plasma membrane, vacuole	41.85	80.21
AT1G28250.1	Thale cress	endoplasmic reticulum, extracellular, vacuole	42.93	77.45
KRH50075	Soybean	cytosol, plasma membrane, vacuole	32.07	55.14
KRH20422	Soybean	cytosol, plasma membrane, vacuole	31.52	54.21
Solyc02g078010.2.1	Tomato	endoplasmic reticulum, plasma membrane, vacuole	31.52	52.25
Zm00001d019447_P001	Maize	endoplasmic reticulum, plasma membrane, vacuole	24.46	41.28
PGSC0003DMT400076381	Potato	endoplasmic reticulum, plasma membrane, vacuole	25.54	41.23
HORVU6Hr1G014620.1	Barley	plasma membrane	23.91	40.37
TraesCS6B01G112200.1	Wheat	plasma membrane	23.91	40.37
TraesCS6A01G090100.1	Wheat	plasma membrane	23.37	39.45
TraesCSU01G016400.1	Wheat	plasma membrane	23.37	39.45
GSMUA_AchrUn_...	Banana	plasma membrane, vacuole	22.83	38.89
Os07t0299600-01	Rice	cytosol, plasma membrane	22.83	36.21
KXG34939	Sorghum	plastid	25.54	29.94

Protein Annotations

EnsemblPlants:CDY46284	EnsemblPlantsGene:GSBRNA2T00083656001	GO:A0A078IAD5	GO:GO:0005575	GO:GO:0016020	GO:GO:0016021
ProteinID:CDY46284	ProteinID:CDY46284.1	SEG:seg	TMHMM:TMhelix	UniParc:UPI0004EF1678	UniProt:A0A078IAD5
MapMan:35.2	:	:	:	:	:

Description

BnaC05g21720DBnaC05g21720D protein [Source:UniProtKB/TrEMBL;Acc:A0A078IAD5]

Coordinates

chrLK032659:-:35418..37540

Molecular Weight (calculated)

20271.8 Da

IEP (calculated)

5.935

GRAVY (calculated)

0.204

Length

184 amino acids

Sequence
(BLAST)

001: MDGNGLYSTR SRGGDLVGTE VCPSDCQQLI NVILNKIEWP SLAAELDEIK LLSSRSRVEC FAIVDDLAPN RNLRKKERKM EKKQRPEISS TEAVLVGALA
101: PGVNAPTWNA LRFAFLLLGL CLTFMLSIAF TSGQSMLLFH VGFLIVIASS LFVLLNWFLA QTGLVPVETQ MQELNLAPTT DKSN

Best Arabidopsis Sequence Match ( AT1G28250.1 )
(BLAST)

001: MEKKSQISST EAVFLGALAP GVNGPTWNTL RFAFLLLGLC LAFMLSVAFT SGQSMLLVHV GFLIVIASTL FILLNWFLAQ TGLVQVETQM QELNLLPNDK
101: TK

Arabidopsis Description

F3H9.10 protein [Source:UniProtKB/TrEMBL;Acc:Q9FZ98]
SUBAcon: [extracellular,endoplasmic reticulum,vacuole]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.