Subcellular Localization
min:
: max
Winner_takes_all: plasma membrane, endoplasmic reticulum, vacuole
Predictor Summary:
Predictor Summary:
- nucleus 1
- endoplasmic reticulum 2
- plasma membrane 3
- peroxisome 1
- extracellular 1
- golgi 1
- vacuole 2
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Solyc02g071920.2.1 | |
| Solyc03g005980.2.1 | |
| Solyc07g066170.2.1 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT1G28250.1 | Solyc02g071920.2.1 | AT4G19030.1 | 21798944 |
| AT1G28250.1 | Solyc03g005980.2.1 | AT4G19030.1 | 21798944 |
| AT1G28250.1 | Solyc07g066170.2.1 | AT4G26455.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| PGSC0003DMT400076381 | Potato | endoplasmic reticulum, plasma membrane, vacuole | 76.58 | 74.56 |
| KRH50075 | Soybean | cytosol, plasma membrane, vacuole | 60.36 | 62.62 |
| KRH20422 | Soybean | cytosol, plasma membrane, vacuole | 57.66 | 59.81 |
| CDY35725 | Canola | endoplasmic reticulum, plasma membrane, vacuole | 47.75 | 55.21 |
| AT1G28250.1 | Thale cress | endoplasmic reticulum, extracellular, vacuole | 49.55 | 53.92 |
| CDY46615 | Canola | endoplasmic reticulum, plasma membrane, vacuole | 50.45 | 53.33 |
| Bra032886.1-P | Field mustard | endoplasmic reticulum, plasma membrane, vacuole | 39.64 | 51.76 |
| GSMUA_AchrUn_... | Banana | plasma membrane, vacuole | 40.54 | 41.67 |
| TraesCS6B01G112200.1 | Wheat | plasma membrane | 40.54 | 41.28 |
| HORVU6Hr1G014620.1 | Barley | plasma membrane | 39.64 | 40.37 |
| TraesCS6A01G090100.1 | Wheat | plasma membrane | 39.64 | 40.37 |
| TraesCSU01G016400.1 | Wheat | plasma membrane | 39.64 | 40.37 |
| Zm00001d019447_P001 | Maize | endoplasmic reticulum, plasma membrane, vacuole | 37.84 | 38.53 |
| Os07t0299600-01 | Rice | cytosol, plasma membrane | 38.74 | 37.07 |
| CDY46284 | Canola | cytosol, peroxisome, plasma membrane | 52.25 | 31.52 |
| KXG34939 | Sorghum | plastid | 36.94 | 26.11 |
Protein Annotations
| EnsemblPlants:Solyc02g078010.2.1 | EnsemblPlantsGene:Solyc02g078010.2 | GO:GO:0005575 | GO:GO:0016020 | GO:GO:0016021 | TMHMM:TMhelix |
| UniParc:UPI0002767F01 | UniProt:K4B926 | MapMan:35.2 | : | : | : |
Description
No Description!
Coordinates
chr2:-:42824277..42826318
Molecular Weight (calculated)
12038.8 Da
IEP (calculated)
4.762
GRAVY (calculated)
0.541
Length
111 amino acids
Sequence
(BLAST)
(BLAST)
001: MESKESNREE LSSAKAVLVG ALAPGVNAPT WNTLKMAFLM LVVCLAVMLG LAFSSSDFSL TLHVAFLFLI TGTLFVLLSR FLAETGFVSV EHQMEEIGLA
101: PRDEDTSKKI S
101: PRDEDTSKKI S
001: MEKKSQISST EAVFLGALAP GVNGPTWNTL RFAFLLLGLC LAFMLSVAFT SGQSMLLVHV GFLIVIASTL FILLNWFLAQ TGLVQVETQM QELNLLPNDK
101: TK
101: TK
Arabidopsis Description
F3H9.10 protein [Source:UniProtKB/TrEMBL;Acc:Q9FZ98]
SUBAcon: [extracellular,endoplasmic reticulum,vacuole]
SUBAcon: [extracellular,endoplasmic reticulum,vacuole]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.