CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum, vacuole, plasma membrane

Predictor Summary:

plastid 1
endoplasmic reticulum 2
extracellular 1
vacuole 2
plasma membrane 2
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	endoplasmic reticulum, plasma membrane, vacuole
Any Predictor:	endoplasmic reticulum, plasma membrane, plastid
BaCelLo:	plastid
MultiLoc:	endoplasmic reticulum
PProwler:	secretory
WoLF PSORT:	vacuole
YLoc:	plasma membrane

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX67837
CDX71796
CDX78905
CDX89063
CDX89333
CDX94330
CDX98596
CDX99411
CDY01565
CDY41153
CDY48365

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G28250.1	CDX67837	AT3G60600.1	21798944
AT1G28250.1	CDX71796	AT3G60600.1	21798944
AT1G28250.1	CDX89063	AT3G60600.1	21798944
AT1G28250.1	CDY41153	AT3G60600.1	21798944
AT1G28250.1	CDY48365	AT3G60600.1	21798944
AT1G28250.1	CDX78905	AT4G19030.1	21798944
AT1G28250.1	CDX98596	AT4G19030.1	21798944
AT1G28250.1	CDX99411	AT4G19030.1	21798944
AT1G28250.1	CDY01565	AT4G19030.1	21798944
AT1G28250.1	CDX89333	AT4G26455.1	21798944
AT1G28250.1	CDX94330	AT4G26455.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra032886.1-P	Field mustard	endoplasmic reticulum, plasma membrane, vacuole	75.24	92.94
CDY35725	Canola	endoplasmic reticulum, plasma membrane, vacuole	74.29	81.25
AT1G28250.1	Thale cress	endoplasmic reticulum, extracellular, vacuole	77.14	79.41
CDY46284	Canola	cytosol, peroxisome, plasma membrane	97.14	55.43
KRH50075	Soybean	cytosol, plasma membrane, vacuole	56.19	55.14
KRH20422	Soybean	cytosol, plasma membrane, vacuole	55.24	54.21
Solyc02g078010.2.1	Tomato	endoplasmic reticulum, plasma membrane, vacuole	53.33	50.45
Zm00001d019447_P001	Maize	endoplasmic reticulum, plasma membrane, vacuole	42.86	41.28
HORVU6Hr1G014620.1	Barley	plasma membrane	41.9	40.37
TraesCS6B01G112200.1	Wheat	plasma membrane	41.9	40.37
PGSC0003DMT400076381	Potato	endoplasmic reticulum, plasma membrane, vacuole	43.81	40.35
GSMUA_AchrUn_...	Banana	plasma membrane, vacuole	40.95	39.81
TraesCS6A01G090100.1	Wheat	plasma membrane	40.95	39.45
TraesCSU01G016400.1	Wheat	plasma membrane	40.95	39.45
Os07t0299600-01	Rice	cytosol, plasma membrane	40.0	36.21
KXG34939	Sorghum	plastid	42.86	28.66

Protein Annotations

EnsemblPlants:CDY46615	EnsemblPlantsGene:GSBRNA2T00085894001	GO:A0A078I6U8	GO:GO:0005575	GO:GO:0016020	GO:GO:0016021
ProteinID:CDY46615	ProteinID:CDY46615.1	SEG:seg	TMHMM:TMhelix	UniParc:UPI0004EE0AC4	UniProt:A0A078I6U8
MapMan:35.2	:	:	:	:	:

Description

BnaA09g27420DBnaA09g27420D protein [Source:UniProtKB/TrEMBL;Acc:A0A078I6U8]

Coordinates

chrLK032679:-:65769..66821

Molecular Weight (calculated)

11476.2 Da

IEP (calculated)

5.710

GRAVY (calculated)

0.649

Length

105 amino acids

Sequence
(BLAST)

001: MEKKQRSEIS STEAVLLGAL APGVNAPTWN ALRFAFLLLG LCLTFMLSIA FTSGQSMLLF HVGFLIVIAS SLFVLLNWFL AQTGLVPVET QMQELNLTPT
101: TDKSN

Best Arabidopsis Sequence Match ( AT1G28250.1 )
(BLAST)

001: MEKKSQISST EAVFLGALAP GVNGPTWNTL RFAFLLLGLC LAFMLSVAFT SGQSMLLVHV GFLIVIASTL FILLNWFLAQ TGLVQVETQM QELNLLPNDK
101: TK

Arabidopsis Description

F3H9.10 protein [Source:UniProtKB/TrEMBL;Acc:Q9FZ98]
SUBAcon: [endoplasmic reticulum,extracellular,vacuole]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.