Subcellular Localization
min:
: max
Winner_takes_all: cytosol, plasma membrane, vacuole
Predictor Summary:
Predictor Summary:
- nucleus 1
- cytosol 1
- golgi 2
- plasma membrane 3
- plastid 1
- extracellular 1
- endoplasmic reticulum 1
- vacuole 2
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| KRH50075 | Soybean | cytosol, plasma membrane, vacuole | 93.46 | 93.46 |
| Solyc02g078010.2.1 | Tomato | endoplasmic reticulum, plasma membrane, vacuole | 59.81 | 57.66 |
| AT1G28250.1 | Thale cress | endoplasmic reticulum, extracellular, vacuole | 53.27 | 55.88 |
| CDY46615 | Canola | endoplasmic reticulum, plasma membrane, vacuole | 54.21 | 55.24 |
| Bra032886.1-P | Field mustard | endoplasmic reticulum, plasma membrane, vacuole | 41.12 | 51.76 |
| CDY35725 | Canola | endoplasmic reticulum, plasma membrane, vacuole | 45.79 | 51.04 |
| PGSC0003DMT400076381 | Potato | endoplasmic reticulum, plasma membrane, vacuole | 51.4 | 48.25 |
| GSMUA_AchrUn_... | Banana | plasma membrane, vacuole | 46.73 | 46.3 |
| Zm00001d019447_P001 | Maize | endoplasmic reticulum, plasma membrane, vacuole | 41.12 | 40.37 |
| HORVU6Hr1G014620.1 | Barley | plasma membrane | 39.25 | 38.53 |
| TraesCSU01G016400.1 | Wheat | plasma membrane | 38.32 | 37.61 |
| Os07t0299600-01 | Rice | cytosol, plasma membrane | 40.19 | 37.07 |
| TraesCS6B01G112200.1 | Wheat | plasma membrane | 37.38 | 36.7 |
| TraesCS6A01G090100.1 | Wheat | plasma membrane | 36.45 | 35.78 |
| CDY46284 | Canola | cytosol, peroxisome, plasma membrane | 54.21 | 31.52 |
| KXG34939 | Sorghum | plastid | 41.12 | 28.03 |
Protein Annotations
| EMBL:ACUP02008264 | EnsemblPlants:KRH20422 | EnsemblPlantsGene:GLYMA_13G178000 | EntrezGene:100775323 | GO:GO:0005575 | GO:GO:0016020 |
| GO:GO:0016021 | ProteinID:KRH20422 | ProteinID:KRH20422.1 | SEG:seg | TMHMM:TMhelix | UniParc:UPI000233B7E3 |
| UniProt:I1M092 | MapMan:35.2 | : | : | : | : |
Description
hypothetical protein
Coordinates
chr13:-:29185314..29187378
Molecular Weight (calculated)
11541.4 Da
IEP (calculated)
5.560
GRAVY (calculated)
0.834
Length
107 amino acids
Sequence
(BLAST)
(BLAST)
001: MENRNTGSDA GDVSSATAVL LGALAPGVNG PTWITLKSTF LLLGLCLAVM LALAFSSSDS WLIFHVAFLV LICLILFLLL SWFLTQTGLV SVEHQMREMG
101: LENLKSK
101: LENLKSK
001: MEKKSQISST EAVFLGALAP GVNGPTWNTL RFAFLLLGLC LAFMLSVAFT SGQSMLLVHV GFLIVIASTL FILLNWFLAQ TGLVQVETQM QELNLLPNDK
101: TK
101: TK
Arabidopsis Description
F3H9.10 protein [Source:UniProtKB/TrEMBL;Acc:Q9FZ98]
SUBAcon: [extracellular,endoplasmic reticulum,vacuole]
SUBAcon: [extracellular,endoplasmic reticulum,vacuole]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.