Factsheet for Bra032886.1-P

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum, vacuole, plasma membrane

Predictor Summary:

plastid 1
plasma membrane 4
endoplasmic reticulum 2
extracellular 1
vacuole 2
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	endoplasmic reticulum, plasma membrane, vacuole
Any Predictor:	plastid, secretory
BaCelLo:	plastid
EpiLoc:	plasma membrane
MultiLoc:	endoplasmic reticulum
Plant-mPloc:	plasma membrane
PProwler:	secretory
WoLF PSORT:	vacuole
YLoc:	plasma membrane

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra003423.1-P
Bra007547.1-P
Bra012567.1-P
Bra013361.1-P
Bra014481.1-P
Bra026434.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G28250.1	Bra003423.1-P	AT3G60600.1	21798944
AT1G28250.1	Bra007547.1-P	AT3G60600.1	21798944
AT1G28250.1	Bra014481.1-P	AT3G60600.1	21798944
AT1G28250.1	Bra012567.1-P	AT4G19030.1	21798944
AT1G28250.1	Bra013361.1-P	AT4G19030.1	21798944
AT1G28250.1	Bra026434.1-P	AT4G26455.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY46615	Canola	endoplasmic reticulum, plasma membrane, vacuole	92.94	75.24
AT1G28250.1	Thale cress	endoplasmic reticulum, extracellular, vacuole	76.47	63.73
KRH50075	Soybean	cytosol, plasma membrane, vacuole	52.94	42.06
CDY46284	Canola	cytosol, peroxisome, plasma membrane	90.59	41.85
KRH20422	Soybean	cytosol, plasma membrane, vacuole	51.76	41.12
Solyc02g078010.2.1	Tomato	endoplasmic reticulum, plasma membrane, vacuole	51.76	39.64
PGSC0003DMT400076381	Potato	endoplasmic reticulum, plasma membrane, vacuole	50.59	37.72
Zm00001d019447_P001	Maize	endoplasmic reticulum, plasma membrane, vacuole	38.82	30.28
GSMUA_AchrUn_...	Banana	plasma membrane, vacuole	36.47	28.7
HORVU6Hr1G014620.1	Barley	plasma membrane	36.47	28.44
TraesCS6A01G090100.1	Wheat	plasma membrane	36.47	28.44
TraesCS6B01G112200.1	Wheat	plasma membrane	36.47	28.44
TraesCSU01G016400.1	Wheat	plasma membrane	36.47	28.44
Os07t0299600-01	Rice	cytosol, plasma membrane	35.29	25.86
KXG34939	Sorghum	plastid	40.0	21.66

Protein Annotations

EnsemblPlants:Bra032886.1	EnsemblPlants:Bra032886.1-P	EnsemblPlantsGene:Bra032886	GO:GO:0005575	GO:GO:0016020	GO:GO:0016021
SEG:seg	TMHMM:TMhelix	UniParc:UPI00025424B6	UniProt:M4EVQ3	MapMan:35.2	:

Description

AT1G28250 (E=3e-022) | unknown protein

Coordinates

chrA09:-:12118977..12119327

Molecular Weight (calculated)

9295.7 Da

IEP (calculated)

8.526

GRAVY (calculated)

1.020

Length

85 amino acids

Sequence
(BLAST)

1: MEKKQRSEIS STEAVLLGAL APGVNAPTWN ALRFAFLLLG LCLTFMLSIA FTSGQSMLLF HVGFLIVIAS SLFVLLNWYV ASPFL

Best Arabidopsis Sequence Match ( AT1G28250.1 )
(BLAST)

001: MEKKSQISST EAVFLGALAP GVNGPTWNTL RFAFLLLGLC LAFMLSVAFT SGQSMLLVHV GFLIVIASTL FILLNWFLAQ TGLVQVETQM QELNLLPNDK
101: TK

Arabidopsis Description

F3H9.10 protein [Source:UniProtKB/TrEMBL;Acc:Q9FZ98]
SUBAcon: [endoplasmic reticulum,extracellular,vacuole]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.