CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 4
mitochondrion 1
extracellular 1
endoplasmic reticulum 1
vacuole 2
plasma membrane 2
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	mitochondrion, plastid, secretory
BaCelLo:	plastid
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	mitochondrion
PProwler:	secretory
TargetP:	plastid
WoLF PSORT:	vacuole
YLoc:	plasma membrane

PPI

Inferred distinct locusB in Crop

locusB	locations
EER96942
EES12559
EES14314
EES14570
KXG31128
OQU81760

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G28250.1	EES12559	AT3G60600.1	21798944
AT1G28250.1	EES14570	AT3G60600.1	21798944
AT1G28250.1	KXG31128	AT3G60600.1	21798944
AT1G28250.1	EER96942	AT4G26455.1	21798944
AT1G28250.1	EES14314	AT4G26455.1	21798944
AT1G28250.1	OQU81760	AT4G26455.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d019447_P001	Maize	endoplasmic reticulum, plasma membrane, vacuole	67.52	97.25
HORVU6Hr1G014620.1	Barley	plasma membrane	54.14	77.98
TraesCS6B01G112200.1	Wheat	plasma membrane	54.14	77.98
TraesCSU01G016400.1	Wheat	plasma membrane	54.14	77.98
TraesCS6A01G090100.1	Wheat	plasma membrane	52.23	75.23
GSMUA_AchrUn_...	Banana	plasma membrane, vacuole	47.13	68.52
Os07t0299600-01	Rice	cytosol, plasma membrane	48.41	65.52
CDY46615	Canola	endoplasmic reticulum, plasma membrane, vacuole	28.66	42.86
KRH50075	Soybean	cytosol, plasma membrane, vacuole	28.66	42.06
KRH20422	Soybean	cytosol, plasma membrane, vacuole	28.03	41.12
Bra032886.1-P	Field mustard	endoplasmic reticulum, plasma membrane, vacuole	21.66	40.0
AT1G28250.1	Thale cress	endoplasmic reticulum, extracellular, vacuole	24.84	38.24
Solyc02g078010.2.1	Tomato	endoplasmic reticulum, plasma membrane, vacuole	26.11	36.94
CDY35725	Canola	endoplasmic reticulum, plasma membrane, vacuole	20.38	33.33
PGSC0003DMT400076381	Potato	endoplasmic reticulum, plasma membrane, vacuole	19.11	26.32
CDY46284	Canola	cytosol, peroxisome, plasma membrane	29.94	25.54

Protein Annotations

EnsemblPlants:KXG34939	EnsemblPlantsGene:SORBI_3002G111600	GO:GO:0005575	GO:GO:0016020	GO:GO:0016021	ProteinID:KXG34939
ProteinID:KXG34939.1	TMHMM:TMhelix	UniParc:UPI00081AD50C	UniProt:A0A1B6QAI9	MapMan:35.2	:

Description

hypothetical protein

Coordinates

chr2:+:13562601..13565084

Molecular Weight (calculated)

17287.4 Da

IEP (calculated)

10.742

GRAVY (calculated)

0.355

Length

157 amino acids

Sequence
(BLAST)

001: MLSVPVLSFF LPVSRRDDCA TAAALHQTGL RRRRAFTCDN SLGHRMEGRR SNEVSSAEAV LVGALSSGVN APTWFVLRIT FLLLALCFTA MLALAFSSKN
101: FVIVAHVLLL VTIGTVLFVL LNRFLAEVGL VPVEQQMKEM GIHKTEATDK DKRGKRN

Best Arabidopsis Sequence Match ( AT1G28250.1 )
(BLAST)

001: MEKKSQISST EAVFLGALAP GVNGPTWNTL RFAFLLLGLC LAFMLSVAFT SGQSMLLVHV GFLIVIASTL FILLNWFLAQ TGLVQVETQM QELNLLPNDK
101: TK

Arabidopsis Description

F3H9.10 protein [Source:UniProtKB/TrEMBL;Acc:Q9FZ98]
SUBAcon: [endoplasmic reticulum,extracellular,vacuole]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.