CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: golgi, plastid, nucleus, cytosol

Predictor Summary:

nucleus 2
cytosol 1
mitochondrion 1
plastid 1
golgi 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
EER88850
EER95301
EER96079
EER96942
EER97479
EER97480
EES01264
EES01977
EES04366
EES05015
EES05430
EES05435
EES07543
EES11077
EES12617
EES12994
EES14314
EES17723
EES18657
EES19450
KXG21620
KXG22640
KXG27192
KXG31086
KXG37644
KXG39905
OQU78406
OQU81760
OQU84413
OQU84732
OQU86053
OQU86697
OQU87114
OQU92576

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G26455.1	EES01264	AT1G30840.1	21798944
AT4G26455.1	EES18657	AT1G30840.1	21798944
AT4G26455.1	OQU78406	AT1G30840.1	21798944
AT4G26455.1	EER97479	AT1G47200.1	17600715
AT4G26455.1	KXG39905	AT1G47200.1	17600715
AT4G26455.1	EES05015	AT1G50430.1	21798944
AT4G26455.1	EER96079	AT1G55535.1	21798944
AT4G26455.1	OQU86697	AT1G77350.1	21798944
AT4G26455.1	EES04366	AT2G03120.1	21798944
AT4G26455.1	KXG37644	AT2G03120.1	21798944
AT4G26455.1	OQU87114	AT2G03120.1	21798944
AT4G26455.1	EES11077	AT2G24290.1	21798944
AT4G26455.1	EES17723	AT2G47770.1	21798944
AT4G26455.1	EES01977	AT3G27080.1	21798944
AT4G26455.1	EES12994	AT3G43520.1	21798944
AT4G26455.1	EES05430	AT3G63130.1	17600715
AT4G26455.1	EES05435	AT3G63130.1	17600715
AT4G26455.1	EES07543	AT3G63130.1	17600715
AT4G26455.1	EES05430	AT3G63130.1	19011093
AT4G26455.1	EES05435	AT3G63130.1	19011093
AT4G26455.1	EES07543	AT3G63130.1	19011093
AT4G26455.1	EES05430	AT3G63130.1	20579133
AT4G26455.1	EES05435	AT3G63130.1	20579133
AT4G26455.1	EES07543	AT3G63130.1	20579133
AT4G26455.1	EES12617	AT4G17340.1	21798944
AT4G26455.1	KXG31086	AT4G17340.1	21798944
AT4G26455.1	EER96942	AT4G26455.1	17600715
AT4G26455.1	EES14314	AT4G26455.1	17600715
AT4G26455.1	OQU81760	AT4G26455.1	17600715
AT4G26455.1	EER95301	AT5G01430.1	21798944
AT4G26455.1	EER97480	AT5G01430.1	21798944
AT4G26455.1	KXG21620	AT5G11390.1	18591351
AT4G26455.1	OQU86053	AT5G11390.1	18591351
AT4G26455.1	EES19450	AT5G12390.1	21798944
AT4G26455.1	OQU92576	AT5G12390.1	21798944
AT4G26455.1	EES05430	AT5G19320.1	17600715
AT4G26455.1	EES05435	AT5G19320.1	17600715
AT4G26455.1	EES07543	AT5G19320.1	17600715
AT4G26455.1	KXG22640	AT5G24130.1	21798944
AT4G26455.1	OQU84732	AT5G24130.1	21798944
AT4G26455.1	EER97479	AT5G43070.1	17600715
AT4G26455.1	KXG39905	AT5G43070.1	17600715
AT4G26455.1	EER96942	AT5G56210.1	17600715
AT4G26455.1	EES14314	AT5G56210.1	17600715
AT4G26455.1	OQU81760	AT5G56210.1	17600715
AT4G26455.1	EER88850	AT5G67210.1	21798944
AT4G26455.1	KXG27192	AT5G67210.1	21798944
AT4G26455.1	OQU84413	AT5G67210.1	21798944
AT5G56210.1	EER97479	AT1G47200.1	17600715
AT5G56210.1	KXG39905	AT1G47200.1	17600715
AT5G56210.1	EES05430	AT3G63130.1	17600715
AT5G56210.1	EES05435	AT3G63130.1	17600715
AT5G56210.1	EES07543	AT3G63130.1	17600715
AT5G56210.1	EES05430	AT3G63130.1	20579133
AT5G56210.1	EES05435	AT3G63130.1	20579133
AT5G56210.1	EES07543	AT3G63130.1	20579133
AT5G56210.1	EER96942	AT4G26455.1	17600715
AT5G56210.1	EES14314	AT4G26455.1	17600715
AT5G56210.1	OQU81760	AT4G26455.1	17600715
AT5G56210.1	KXG21620	AT5G11390.1	18591351
AT5G56210.1	OQU86053	AT5G11390.1	18591351
AT5G56210.1	EES05430	AT5G19320.1	17600715
AT5G56210.1	EES05435	AT5G19320.1	17600715
AT5G56210.1	EES07543	AT5G19320.1	17600715
AT5G56210.1	EER97479	AT5G43070.1	17600715
AT5G56210.1	KXG39905	AT5G43070.1	17600715
AT5G56210.1	EER96942	AT5G56210.1	17600715
AT5G56210.1	EES14314	AT5G56210.1	17600715
AT5G56210.1	OQU81760	AT5G56210.1	17600715

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d005997_P002	Maize	plastid	88.38	89.03
Zm00001d020879_P001	Maize	cytosol, golgi, nucleus, plastid	60.89	82.29
TraesCS5A01G257000.1	Wheat	cytosol, golgi, nucleus, plastid	59.96	59.63
TraesCS5B01G256500.1	Wheat	cytosol, golgi, nucleus, plastid	59.96	59.52
HORVU5Hr1G071910.1	Barley	nucleus	60.15	59.49
TraesCS5D01G265600.1	Wheat	nucleus	60.33	59.24
Os09t0481300-01	Rice	nucleus	56.27	57.87
EES14314	Sorghum	nucleus	39.67	42.49
GSMUA_Achr10P...	Banana	cytosol	28.23	30.36
GSMUA_Achr4P01630_001	Banana	cytosol, golgi, nucleus	33.21	30.25
GSMUA_Achr3P04120_001	Banana	nucleus	31.92	29.12
OQU81760	Sorghum	nucleus	21.77	27.7
Bra002835.1-P	Field mustard	cytosol, golgi, nucleus	12.73	25.0
CDY32806	Canola	cytosol, golgi, nucleus	12.73	24.73
Bra039387.1-P	Field mustard	cytosol, golgi, nucleus, plastid	18.08	24.5
Solyc07g066170.2.1	Tomato	nucleus	15.13	24.48
CDY43354	Canola	cytosol, golgi, nucleus	17.9	24.31
CDY17403	Canola	nucleus	12.36	24.28
CDX89333	Canola	nucleus	21.96	24.04
Bra026434.1-P	Field mustard	nucleus	21.96	24.04
CDX94330	Canola	nucleus	21.77	24.03
AT5G56210.1	Thale cress	nucleus	22.51	23.97
VIT_19s0015g01790.t01	Wine grape	nucleus	26.94	23.78
KRH56393	Soybean	cytosol	25.65	23.68
PGSC0003DMT400056956	Potato	nucleus	25.83	23.41
AT4G26455.1	Thale cress	nucleus	20.85	23.11
KRH62532	Soybean	endoplasmic reticulum	24.54	22.73
PGSC0003DMT400022426	Potato	nucleus	24.35	22.53
CDX75706	Canola	cytosol, golgi, nucleus	16.97	21.9
CDY24192	Canola	plastid	12.18	21.78
Bra001502.1-P	Field mustard	nucleus, plastid	16.79	20.59
CDX82542	Canola	plastid	16.61	20.32
AT3G13360.2	Thale cress	extracellular, plasma membrane, vacuole	18.27	19.11

Protein Annotations

EnsemblPlants:EER96942	EnsemblPlantsGene:SORBI_3002G242200	ncoils:Coil	PANTHER:PTHR34562	PANTHER:PTHR34562:SF1	ProteinID:EER96942
ProteinID:EER96942.2	SEG:seg	UniParc:UPI00081ADF81	UniProt:C5X3R8	MapMan:20.4.2.1.2	:

Description

hypothetical protein

Coordinates

chr2:-:63150942..63153974

Molecular Weight (calculated)

58071.3 Da

IEP (calculated)

4.869

GRAVY (calculated)

-0.543

Length

542 amino acids

Sequence
(BLAST)

001: MDSAANSVGE SVGESPAPAP APEPQTPPAE PVTKGRGLRR WRRIPREQHH EGSPASPGAG TGAGATAGED LAAQLHKRRY GPAADEPKGK QDAAAAEEVE
101: SSVASVESSF VPLEASPPPA PAPALTRLDP NLGHLIATAG FSVGAGGADS DNSDDRTSKS STAASAPRHD FSSVGFGRER DRARSRAPGA AHGKGIRAAR
201: VRGASARVAS SPAEAENSRS SVESNLRSSN AAHARRSSSG VTSNGVHKVL FPDGHQSDDE PPSADLRYAT GGFYKENGSV IGRLANCDSD SNNHIFDEAS
301: AGKFENGGTH SGLDPYAESV ALLQSAQEAL ENEIQKFVEI REETDEDSTT HQSEIEWSSS PVEELNEKIK MLESKLEEAT MVINKQDSKI IELDALSQVQ
401: PQNTIACNND LLSLPSDVDQ LLLEKLEAEI QCFILTRAWQ DWKLLTKDQF ALNETQKSLL ADHKSLETKL RHAENRAMML EEMVDKLESQ CKELSETSEV
501: LKLQARASRV SLFCSVQFVL LCLAMGTLLV RFLPSSPDIV PT

Best Arabidopsis Sequence Match ( AT4G26455.1 )
(BLAST)

001: MDLESESSAL ESVDDNVLIQ QSASNVCDDG RSLDNGSCSD ESVKLLSTSN SVELGKPMSF DSPGDGGGAY SPVLKGQGLR KWRRIRRDLV KDTSANMENS
101: KALKRGLSGV AHSHGKQMQF QSPEVEQESQ GSVGSVNMLK SSGDGFDILG SSGYDSRFVA GVGFSAGMDL EIDDDRSSKS STVARAPKVI RYEKPMISSG
201: QGGNIRVENS KKHRGESVDF EKENSYSSLE SDSRKQSGRM MDYNGENGET SMRKDDAGGE GGESINTDNR YSDEMDPLTE AINGFLALQD ALEKEVQQFQ
301: EIGNEPMPQH HEQVSEANSP HPEIVTLVNN VEQLENMLEE TRSMLEVKES HIRDLESTTN QSKHSWGGTE IVVEDIFRQK IEAEIEYLIY SRSIDNLNSQ
401: MKLIDEQESL AEEQTHETLN KLGRVQTKAA NFTNRAQDLQ NDCIEITGTI KKRACKITSY VLIQLVLLST VVLLLLSQLL PEPDTVVPT

Arabidopsis Description

WIP1WPP domain-interacting protein 1 [Source:UniProtKB/Swiss-Prot;Acc:Q8GXA4]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.