CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 7
nucleus 1
peroxisome 1
golgi 1
extracellular 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
EER87676
EES02290
EES19830
OQU79937

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G43520.1	EER87676	AT1G01010.1	21798944
AT3G43520.1	EES02290	AT3G16310.1	21798944
AT3G43520.1	EES19830	AT3G16310.1	21798944
AT3G43520.1	OQU79937	AT3G49530.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
HORVU2Hr1G112370.1	Barley	golgi, mitochondrion, plastid	40.87	84.16
Zm00001d002028_P001	Maize	plastid	73.56	82.7
GSMUA_Achr5P24090_001	Banana	extracellular, golgi, plasma membrane	41.83	80.56
TraesCS2A01G506400.1	Wheat	plastid	75.96	76.7
TraesCS2D01G507100.1	Wheat	golgi	75.48	76.21
TraesCS2B01G534700.1	Wheat	golgi	74.52	75.24
AT2G26240.1	Thale cress	cytosol, extracellular	29.81	57.41
Os04t0653100-01	Rice	plasma membrane, plastid	75.96	51.47
PGSC0003DMT400040174	Potato	cytosol, peroxisome, plastid	41.35	50.29
KRH02516	Soybean	plastid	50.48	47.3
HORVU2Hr1G112380.1	Barley	peroxisome	48.56	46.54
KRH19425	Soybean	plastid	50.96	46.49
VIT_07s0130g00480.t01	Wine grape	plastid	52.88	44.72
CDY11499	Canola	endoplasmic reticulum, extracellular, golgi, plasma membrane, plastid, vacuole	28.37	43.7
Bra007767.1-P	Field mustard	cytosol	27.4	43.51
Zm00001d026478_P001	Maize	extracellular, plastid	31.73	42.31
CDY30952	Canola	plastid	43.75	41.55
Bra019447.1-P	Field mustard	plastid	43.75	41.55
CDX76725	Canola	endoplasmic reticulum, extracellular, golgi, plasma membrane, plastid, vacuole	28.37	40.41
CDY44845	Canola	plastid	43.27	38.46
PGSC0003DMT400040171	Potato	plastid	43.75	36.99
PGSC0003DMT400040170	Potato	plastid	43.75	36.99
AT3G43520.1	Thale cress	plastid	41.35	35.83
Solyc11g073240.1.1	Tomato	plastid	42.79	35.74

Protein Annotations

EnsemblPlants:EES12994	EnsemblPlantsGene:SORBI_3006G244900	EntrezGene:8068500	Gene3D:1.20.58.1140	GO:GO:0005575	GO:GO:0016020
GO:GO:0016021	InterPro:TMEM14	PANTHER:PTHR12668	PANTHER:PTHR12668:SF5	PFAM:PF03647	ProteinID:EES12994
ProteinID:EES12994.1	RefSeq:XP_002448666.1	SEG:seg	TMHMM:TMhelix	unigene:Sbi.8264	UniParc:UPI0001A87467
UniProt:C5Y9G2	MapMan:24.2.22	:	:	:	:

Description

hypothetical protein

Coordinates

chr6:-:58469597..58472783

Molecular Weight (calculated)

20735.3 Da

IEP (calculated)

9.773

GRAVY (calculated)

0.300

Length

208 amino acids

Sequence
(BLAST)

001: MALALATTPL THLAVAPLPI SGSQSSLLLL PRRASHAPVS LSLPLRSRLI AAVATKEEPE LGGGGSGGDD GAGGSGGGGG SDPKEGGQEG EGEEEKMEQG
101: LSLSQKLTLA YAALVGAGGV MGYMKSGSQK SLAAGGISAL VLYFVHTQLP VRPVFASSIG LGIAAALLSV MGSRFKKSGK IFPAGVVSLV SLVMVGGYFH
201: GILRSSHA

Best Arabidopsis Sequence Match ( AT3G43520.1 )
(BLAST)

001: MADLILSSSS AQSSLLHVRP NHYLLNTSTA SPIRSVRFQN SNGFHPLAFA SGHRRLPLGA VVPSDSTKTI TSTITANCVD SGVKAVEVEP TIDYGGGGGI
101: GGDKFGGGGG GGDGNDDGGE DDKEESDGKK STPLSMSQKL TLGYAFLVGV GGLMGYLKSG SQKSLLAGGL SAAVLLYVFS QLPTKPVLAS TVGVVMAGAL
201: MYVMGTRYMR SKKIFPAGVV SIMSFIMTGG YIHGIMRSLH

Arabidopsis Description

FAX2Protein FATTY ACID EXPORT 2, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q94A32]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.