Factsheet for PGSC0003DMT400040171

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 9
plasma membrane 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
PGSC0003DMT400001498
PGSC0003DMT400006495
PGSC0003DMT400015077
PGSC0003DMT400050482
PGSC0003DMT400069511

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G43520.1	PGSC0003DMT400006495	AT3G16310.1	21798944
AT3G43520.1	PGSC0003DMT400001498	AT3G49530.1	21798944
AT3G43520.1	PGSC0003DMT400069511	AT3G49530.1	21798944
AT3G43520.1	PGSC0003DMT400015077	AT5G22290.1	21798944
AT3G43520.1	PGSC0003DMT400050482	AT5G22290.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400040170	Potato	plastid	100.0	100.0
PGSC0003DMT400040174	Potato	cytosol, peroxisome, plastid	55.28	79.53
GSMUA_Achr5P24090_001	Banana	extracellular, golgi, plasma membrane	30.49	69.44
GSMUA_Achr3P05290_001	Banana	extracellular	29.27	64.86
Solyc11g073240.1.1	Tomato	plastid	63.01	62.25
AT2G26240.1	Thale cress	cytosol, extracellular	27.24	62.04
HORVU2Hr1G112370.1	Barley	golgi, mitochondrion, plastid	24.8	60.4
CDY11499	Canola	endoplasmic reticulum, extracellular, golgi, plasma membrane, plastid, vacuole	26.83	48.89
CDY30952	Canola	plastid	42.68	47.95
Bra019447.1-P	Field mustard	plastid	42.68	47.95
Bra007767.1-P	Field mustard	cytosol	24.8	46.56
KRH02516	Soybean	plastid	41.06	45.5
CDY44845	Canola	plastid	43.09	45.3
CDX76725	Canola	endoplasmic reticulum, extracellular, golgi, plasma membrane, plastid, vacuole	26.83	45.21
TraesCS2D01G507100.1	Wheat	golgi	37.8	45.15
TraesCS2A01G506400.1	Wheat	plastid	37.4	44.66
TraesCS2B01G534700.1	Wheat	golgi	36.99	44.17
EES12994	Sorghum	plastid	36.99	43.75
KRH19425	Soybean	plastid	40.24	43.42
VIT_07s0130g00480.t01	Wine grape	plastid	42.68	42.68
AT3G43520.1	Thale cress	plastid	41.06	42.08
GSMUA_AchrUn_...	Banana	endoplasmic reticulum, extracellular, plasma membrane	14.63	40.91
Zm00001d002028_P001	Maize	plastid	29.27	38.92
HORVU2Hr1G112380.1	Barley	peroxisome	30.49	34.56
GSMUA_AchrUn_...	Banana	mitochondrion	13.01	34.04
Zm00001d026478_P001	Maize	extracellular, plastid	19.92	31.41
Os04t0653100-01	Rice	plasma membrane, plastid	37.4	29.97

Protein Annotations

EnsemblPlants:PGSC0003DMT400040171	EnsemblPlantsGene:PGSC0003DMG401015541	EntrezGene:102590071	Gene3D:1.20.58.1140	GO:GO:0005575	GO:GO:0016020
GO:GO:0016021	InterPro:TMEM14	PANTHER:PTHR12668	PANTHER:PTHR12668:SF5	PFAM:PF03647	PGSC:PGSC0003DMG401015541
RefSeq:XP_006363375.1	RefSeq:XP_006363376.1	SEG:seg	TMHMM:TMhelix	UniParc:UPI0002949103	UniProt:M1B9G2
MapMan:24.2.22	:	:	:	:	:

Description

Transmembrane protein 14 [Source:PGSC_GENE;Acc:PGSC0003DMG401015541]

Coordinates

chr11:+:45367342..45371526

Molecular Weight (calculated)

25198.1 Da

IEP (calculated)

9.359

GRAVY (calculated)

0.060

Length

246 amino acids

Sequence
(BLAST)

001: MGEFLAISQS SIVLPNFRVQ AWSQRQLFIA HSQPLRSLHT LTTSRTVYPG LSAGSKHFSL GVRASVVSAD STMPTTFTVD PAGPGIDILP EAGGGGGSDS
101: GGTNDDSGGR GDSGGNNNDG GNEGGSDEGE DHNNKKKMAL SMSQKLTLGY AFLVGAGGFM GYLKSGSTKS LIAGGVSASL LYAVYTMLPT QPVLASAIGF
201: VLSAGLLGVM GSRFLKSKKV FPAGVVSCVS FIMTGGYLHG ILRSAH

Best Arabidopsis Sequence Match ( AT3G43520.1 )
(BLAST)

001: MADLILSSSS AQSSLLHVRP NHYLLNTSTA SPIRSVRFQN SNGFHPLAFA SGHRRLPLGA VVPSDSTKTI TSTITANCVD SGVKAVEVEP TIDYGGGGGI
101: GGDKFGGGGG GGDGNDDGGE DDKEESDGKK STPLSMSQKL TLGYAFLVGV GGLMGYLKSG SQKSLLAGGL SAAVLLYVFS QLPTKPVLAS TVGVVMAGAL
201: MYVMGTRYMR SKKIFPAGVV SIMSFIMTGG YIHGIMRSLH

Arabidopsis Description

FAX2Protein FATTY ACID EXPORT 2, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q94A32]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.