CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 9

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	plastid
BaCelLo:	plastid
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	plastid
Predotar:	plastid
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	plastid

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX70995
CDX88803
CDX89999
CDX92368
CDX97739
CDY00208
CDY05939
CDY08139
CDY09128
CDY15210
CDY15212
CDY15214
CDY15215
CDY30157
CDY35676

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G43520.1	CDX89999	AT1G01010.1	21798944
AT3G43520.1	CDY15210	AT1G01010.1	21798944
AT3G43520.1	CDY15212	AT1G01010.1	21798944
AT3G43520.1	CDY15214	AT1G01010.1	21798944
AT3G43520.1	CDY15215	AT1G01010.1	21798944
AT3G43520.1	CDX97739	AT3G16310.1	21798944
AT3G43520.1	CDY30157	AT3G16310.1	21798944
AT3G43520.1	CDY00208	AT3G49530.1	21798944
AT3G43520.1	CDY05939	AT3G49530.1	21798944
AT3G43520.1	CDY08139	AT3G49530.1	21798944
AT3G43520.1	CDX70995	AT5G22290.1	21798944
AT3G43520.1	CDX88803	AT5G22290.1	21798944
AT3G43520.1	CDX92368	AT5G22290.1	21798944
AT3G43520.1	CDY09128	AT5G22290.1	21798944
AT3G43520.1	CDY35676	AT5G22290.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY30952	Canola	plastid	76.92	82.19
AT3G43520.1	Thale cress	plastid	71.37	69.58
GSMUA_Achr5P24090_001	Banana	extracellular, golgi, plasma membrane	28.63	62.04
HORVU2Hr1G112370.1	Barley	golgi, mitochondrion, plastid	25.21	58.42
GSMUA_Achr3P05290_001	Banana	extracellular	26.5	55.86
PGSC0003DMT400040174	Potato	cytosol, peroxisome, plastid	37.18	50.88
CDY11499	Canola	endoplasmic reticulum, extracellular, golgi, plasma membrane, plastid, vacuole	26.5	45.93
EES12994	Sorghum	plastid	38.46	43.27
PGSC0003DMT400040170	Potato	plastid	45.3	43.09
PGSC0003DMT400040171	Potato	plastid	45.3	43.09
TraesCS2D01G507100.1	Wheat	golgi	37.61	42.72
TraesCS2A01G506400.1	Wheat	plastid	37.61	42.72
CDX76725	Canola	endoplasmic reticulum, extracellular, golgi, plasma membrane, plastid, vacuole	26.5	42.47
TraesCS2B01G534700.1	Wheat	golgi	36.75	41.75
KRH02516	Soybean	plastid	38.03	40.09
KRH19425	Soybean	plastid	36.75	37.72
VIT_07s0130g00480.t01	Wine grape	plastid	39.32	37.4
Solyc11g073240.1.1	Tomato	plastid	39.74	37.35
Zm00001d002028_P001	Maize	plastid	29.49	37.3
HORVU2Hr1G112380.1	Barley	peroxisome	30.77	33.18
GSMUA_AchrUn_...	Banana	endoplasmic reticulum, extracellular, plasma membrane	12.39	32.95
Zm00001d026478_P001	Maize	extracellular, plastid	20.09	30.13
GSMUA_AchrUn_...	Banana	mitochondrion	11.97	29.79
Os04t0653100-01	Rice	plasma membrane, plastid	38.46	29.32

Protein Annotations

EnsemblPlants:CDY44845	EnsemblPlantsGene:GSBRNA2T00080883001	Gene3D:1.20.58.1140	GO:A0A078I1U3	GO:GO:0005575	GO:GO:0016020
GO:GO:0016021	InterPro:TMEM14	PANTHER:PTHR12668	PANTHER:PTHR12668:SF5	PFAM:PF03647	ProteinID:CDY44845
ProteinID:CDY44845.1	SEG:seg	TMHMM:TMhelix	UniParc:UPI0004EDB90F	UniProt:A0A078I1U3	MapMan:24.2.22

Description

BnaCnng12010DBnaCnng12010D protein [Source:UniProtKB/TrEMBL;Acc:A0A078I1U3]

Coordinates

chrLK032603:+:137207..138567

Molecular Weight (calculated)

23810.0 Da

IEP (calculated)

9.738

GRAVY (calculated)

0.259

Length

234 amino acids

Sequence
(BLAST)

001: MAELLLSSSA QSSLLNVRPR ILSFNTPSAS PIRSIAFTNS KGFHPLAFKS GHQRLSFGAD STKLITCITV NCVDSGAKAV EVEPVIGGGG GGGIGGDKFG
101: GGGGGGDDND EGEGGGEEGS GGKTPLPLSM SQKLTLGYAF LVGVGGLMGY LKSGSQKSLL AGGLSAAVLL FVFRELPTKP VLASTIGVVM AGALTWVMGT
201: RYMGSKKIFP AGVVSFMSFI MTGGYIHGIM RSLH

Best Arabidopsis Sequence Match ( AT3G43520.1 )
(BLAST)

001: MADLILSSSS AQSSLLHVRP NHYLLNTSTA SPIRSVRFQN SNGFHPLAFA SGHRRLPLGA VVPSDSTKTI TSTITANCVD SGVKAVEVEP TIDYGGGGGI
101: GGDKFGGGGG GGDGNDDGGE DDKEESDGKK STPLSMSQKL TLGYAFLVGV GGLMGYLKSG SQKSLLAGGL SAAVLLYVFS QLPTKPVLAS TVGVVMAGAL
201: MYVMGTRYMR SKKIFPAGVV SIMSFIMTGG YIHGIMRSLH

Arabidopsis Description

FAX2Protein FATTY ACID EXPORT 2, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q94A32]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.