Factsheet for GSMUA_Achr5P24090_001

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane, golgi, extracellular

Predictor Summary:

nucleus 1
extracellular 4
endoplasmic reticulum 3
vacuole 4
plasma membrane 4
golgi 4

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular, golgi, plasma membrane
Any Predictor:	nucleus, secretory
BaCelLo:	nucleus
iPSORT:	secretory
MultiLoc:	golgi
Plant-mPloc:	vacuole
Predotar:	secretory
PProwler:	secretory
WoLF PSORT:	plasma membrane
YLoc:	extracellular

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr11P...
GSMUA_Achr1P03560_001
GSMUA_Achr2P11810_001
GSMUA_Achr4P08270_001
GSMUA_Achr4P15460_001
GSMUA_Achr4P29170_001
GSMUA_Achr6P14800_001
GSMUA_AchrUn_...

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G43520.1	GSMUA_Achr4P08270_001	AT3G16310.1	21798944
AT3G43520.1	GSMUA_Achr4P15460_001	AT3G16310.1	21798944
AT3G43520.1	GSMUA_Achr6P14800_001	AT3G16310.1	21798944
AT3G43520.1	GSMUA_Achr11P...	AT3G49530.1	21798944
AT3G43520.1	GSMUA_Achr1P03560_001	AT3G49530.1	21798944
AT3G43520.1	GSMUA_Achr2P11810_001	AT3G49530.1	21798944
AT3G43520.1	GSMUA_Achr4P29170_001	AT3G49530.1	21798944
AT3G43520.1	GSMUA_AchrUn_...	AT3G49530.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
HORVU2Hr1G112370.1	Barley	golgi, mitochondrion, plastid	67.59	72.28
GSMUA_Achr3P05290_001	Banana	extracellular	70.37	68.47
AT2G26240.1	Thale cress	cytosol, extracellular	54.63	54.63
GSMUA_AchrUn_...	Banana	endoplasmic reticulum, extracellular, plasma membrane	35.19	43.18
PGSC0003DMT400040174	Potato	cytosol, peroxisome, plastid	66.67	42.11
EES12994	Sorghum	plastid	80.56	41.83
CDY11499	Canola	endoplasmic reticulum, extracellular, golgi, plasma membrane, plastid, vacuole	51.85	41.48
TraesCS2D01G507100.1	Wheat	golgi	77.78	40.78
TraesCS2B01G534700.1	Wheat	golgi	77.78	40.78
TraesCS2A01G506400.1	Wheat	plastid	77.78	40.78
HORVU2Hr1G112380.1	Barley	peroxisome	78.7	39.17
CDX76725	Canola	endoplasmic reticulum, extracellular, golgi, plasma membrane, plastid, vacuole	51.85	38.36
Bra007767.1-P	Field mustard	cytosol	45.37	37.4
KRH02516	Soybean	plastid	75.93	36.94
VIT_07s0130g00480.t01	Wine grape	plastid	81.48	35.77
GSMUA_AchrUn_...	Banana	mitochondrion	30.56	35.11
KRH19425	Soybean	plastid	74.07	35.09
Zm00001d002028_P001	Maize	plastid	59.26	34.59
Zm00001d026478_P001	Maize	extracellular, plastid	49.07	33.97
CDY30952	Canola	plastid	62.04	30.59
Bra019447.1-P	Field mustard	plastid	62.04	30.59
PGSC0003DMT400040171	Potato	plastid	69.44	30.49
PGSC0003DMT400040170	Potato	plastid	69.44	30.49
Solyc11g073240.1.1	Tomato	plastid	67.59	29.32
CDY44845	Canola	plastid	62.04	28.63
Os04t0653100-01	Rice	plasma membrane, plastid	80.56	28.34
AT3G43520.1	Thale cress	plastid	61.11	27.5

Protein Annotations

EnsemblPlants:GSMUA_Achr5P24090_001	EnsemblPlants:GSMUA_Achr5T24090_001	EnsemblPlantsGene:GSMUA_Achr5G24090_001	Gene3D:1.20.58.1140	GO:GO:0005575	GO:GO:0016020
GO:GO:0016021	InterPro:TMEM14	PANTHER:PTHR12668	PANTHER:PTHR12668:SF5	PFAM:PF03647	SEG:seg
TMHMM:TMhelix	UniParc:UPI000296A30F	UniProt:M0T184	MapMan:24.2.22	:	:

Description

UPF0136 membrane protein At2g26240 [Source:GMGC_GENE;Acc:GSMUA_Achr5G24090_001]

Coordinates

chr5:+:25567568..25570826

Molecular Weight (calculated)

11143.2 Da

IEP (calculated)

10.956

GRAVY (calculated)

0.947

Length

108 amino acids

Sequence
(BLAST)

001: MSMSQKVTLG YAALVGVGGI MGYVKSGSQK SLAVGGIAAL LLYFVYTLLP VRPAFASSLG LGLSAALLVV MGSRFKKSGK IFPAGIVSLV SFIMVGGYFH
101: GILRSSHV

Best Arabidopsis Sequence Match ( AT3G43520.1 )
(BLAST)

001: MADLILSSSS AQSSLLHVRP NHYLLNTSTA SPIRSVRFQN SNGFHPLAFA SGHRRLPLGA VVPSDSTKTI TSTITANCVD SGVKAVEVEP TIDYGGGGGI
101: GGDKFGGGGG GGDGNDDGGE DDKEESDGKK STPLSMSQKL TLGYAFLVGV GGLMGYLKSG SQKSLLAGGL SAAVLLYVFS QLPTKPVLAS TVGVVMAGAL
201: MYVMGTRYMR SKKIFPAGVV SIMSFIMTGG YIHGIMRSLH

Arabidopsis Description

FAX2Protein FATTY ACID EXPORT 2, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q94A32]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.